Evidence map›Paper›PMID 30533668›Full record

ArticleMicrobiology resource announcements2018

Complete Genome Sequences of Historic Clostridioides difficile Food-Dwelling Ribotype 078 Strains in Canada Identical to That of the Historic Human Clinical Strain M120 in the United Kingdom.

Anand Kumar, Karen Walston Davenport, Grace Vuyisich, Yuliya A Kunde, Shannon Lyn Johnson, Patrick Sam Guy Chain, Armand Earl Ko Dichosa, Alex Rodriguez-Palacios

Open access · diamondAbstract read
In one paragraph

Article in Microbiology resource announcements, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 2 pooled it
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 2 syntheses or guidelines pooled it, 13 citations in OpenAlex.

  1. Pooled it
  2. Global and Historical Distribution ofFrontiers in medicine · 2020
    Pooled it
  3. The complete genome sequence of probioticMicrobiology resource announcements · 2024
    Article
  4. Genomes ofMicrobiology resource announcements · 2024
    Article
  5. Detection and Genomic Characterisation ofPathogens (Basel, Switzerland) · 2022
    Article
  6. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2022
    Article
  7. Transition From PCR-Ribotyping to Whole Genome Sequencing Based Typing ofFrontiers in cellular and infection microbiology · 2021
    Article
  8. Article
  9. Fructooligosaccharides and mannose affect Clostridium difficile adhesion and biofilm formation in a concentration-dependent manner.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2019
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Anand KumarB-10: Biosecurity and Public Health, Los Alamos National Laboratory, Los Alamos, New Mexico, USA.ORCID https://orcid.org/0000-0001-9290-0927
Karen Walston DavenportB-10: Biosecurity and Public Health, Los Alamos National Laboratory, Los Alamos, New Mexico, USA.
Grace VuyisichB-10: Biosecurity and Public Health, Los Alamos National Laboratory, Los Alamos, New Mexico, USA.
Yuliya A KundeB-10: Biosecurity and Public Health, Los Alamos National Laboratory, Los Alamos, New Mexico, USA.
Shannon Lyn JohnsonB-10: Biosecurity and Public Health, Los Alamos National Laboratory, Los Alamos, New Mexico, USA.ORCID https://orcid.org/0000-0002-3972-9208
Patrick Sam Guy ChainB-10: Biosecurity and Public Health, Los Alamos National Laboratory, Los Alamos, New Mexico, USA.
Armand Earl Ko DichosaB-10: Biosecurity and Public Health, Los Alamos National Laboratory, Los Alamos, New Mexico, USA.
Alex Rodriguez-PalaciosDivision of Gastroenterology & Liver Disease, Case Western Reserve University School of Medicine, Cleveland, Ohio, USA.
Los Alamos National Laboratory · USUniversity School · US

Funding

Ubiquitination Pathways Mediating Chronic Intestinal InflammationP01DK091222 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI COMINELLI, FABIO · 2011 to 2020
$16.5M
The Cleveland Digestive Diseases Research Core Center (DDRCC)P30DK097948 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI Theresa Torres Pizarro · 2015 to 2026
$15.6M
NIDDK NIH HHS P01 DK091222NIDDK NIH HHS P30 DK097948
6 · The paper itself

Abstract

Clostridioides (Clostridium) difficile is a spore-forming anaerobic bacterium that causes severe intestinal diseases in humans. Here, we report the complete genome sequence of the first C. difficile foodborne type strain (PCR ribotype 078) isolated from food animals in Canada in 2004, which has 100% similarity to the genome sequence of the historic human clinical strain M120.

Identifiers

PMID30533668
PMCPMC6256691
OpenAlexW2892854479

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.