Evidence map›Paper›PMID 30533038›Full record

ArticlePloS one2018

A novel network-based approach for discovering dynamic metabolic biomarkers in cardiovascular disease.

Christian Baumgartner, Verena Spath-Blass, Verena Niederkofler, Katharina Bergmoser, Sonja Langthaler, Alexander Lassnig, Theresa Rienmüller, Daniela Baumgartner, Aarti Asnani, Robert E Gerszten

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Network medicine in Cardiovascular Research.Cardiovascular research · 2021
    Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Christian BaumgartnerInstitute of Health Care Engineering with European Testing Center of Medical Devices, Graz University of Technology, Graz, Austria.ORCID 0000-0002-3763-5195
Verena Spath-BlassInstitute of Health Care Engineering with European Testing Center of Medical Devices, Graz University of Technology, Graz, Austria.
Verena NiederkoflerInstitute of Health Care Engineering with European Testing Center of Medical Devices, Graz University of Technology, Graz, Austria.
Katharina BergmoserInstitute of Health Care Engineering with European Testing Center of Medical Devices, Graz University of Technology, Graz, Austria.
Sonja LangthalerInstitute of Health Care Engineering with European Testing Center of Medical Devices, Graz University of Technology, Graz, Austria.
Alexander LassnigInstitute of Health Care Engineering with European Testing Center of Medical Devices, Graz University of Technology, Graz, Austria.
Theresa RienmüllerInstitute of Health Care Engineering with European Testing Center of Medical Devices, Graz University of Technology, Graz, Austria.
Daniela BaumgartnerDepartment of Pediatric Cardiology, Medical University of Graz, Graz, Austria.
Aarti AsnaniCardiovascular Medicine, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts, United States of America.
Robert E GersztenCardiovascular Medicine, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts, United States of America.

Funding

PRIMARY PREVENTION TRIAL--DATA COORDINATING CENTERU01DK048489 · NIDDK · GEORGE WASHINGTON UNIVERSITY · PI JABLONSKI, KATHLEEN ANN, TEMPROSA, MARINELLA · 1994 to 2021
$84.8M
ROLE OF DIETARY CONSTITUENTS ON GENE EXPRESSION IN INTESTINAL EPITHELIUMP30DK040561 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI CHRISTOPHER P DUGGAN · 1994 to 2026
$31.6M
Metabolomic predictors of insulin resistance and diabetesR01DK081572 · NIDDK · VANDERBILT UNIVERSITY · PI CLISH, CLARY B, GERSZTEN, ROBERT E · 2008 to 2025
$9.3M
Metabolomic Biomarkers of Early Myocardial InjuryR01HL098280 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI GERSZTEN, ROBERT E, SABATINE, MARC S · 2010 to 2014
$3.7M
NHLBI NIH HHS R01 HL098280NIDDK NIH HHS P30 DK040561NIDDK NIH HHS R01 DK081572NIDDK NIH HHS U01 DK048489
6 · The paper itself

Abstract

Metabolic biomarkers may play an important role in the diagnosis, prognostication and assessment of response to pharmacological therapy in complex diseases. The process of discovering new metabolic biomarkers is a non-trivial task which involves a number of bioanalytical processing steps coupled with a computational approach for the search, prioritization and verification of new biomarker candidates. Kinetic analysis provides an additional dimension of complexity in time-series data, allowing for a more precise interpretation of biomarker dynamics in terms of molecular interaction and pathway modulation. A novel network-based computational strategy for the discovery of putative dynamic biomarker candidates is presented, enabling the identification and verification of unexpected metabolic signatures in complex diseases such as myocardial infarction. The novelty of the proposed method lies in combining metabolic time-series data into a superimposed graph representation, highlighting the strength of the underlying kinetic interaction of preselected analytes. Using this approach, we were able to confirm known metabolic signatures and also identify new candidates such as carnosine and glycocholic acid, and pathways that have been previously associated with cardiovascular or related diseases. This computational strategy may serve as a complementary tool for the discovery of dynamic metabolic or proteomic biomarkers in the field of clinical medicine.

Indexed as

Metabolic Networks and PathwaysProteomicsBiomarkersCardiovascular DiseasesComputational BiologyHumansKineticsMass SpectrometryMyocardial InfarctionBiomarkers

Identifiers

PMID30533038
PMCPMC6289413

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.