Evidence map›Paper›PMID 30533020›Full record

ArticlePloS one2018

Validation of epigenetic mechanisms regulating gene expression in canine B-cell lymphoma: An in vitro and in vivo approach.

Silvia Da Ros, Luca Aresu, Serena Ferraresso, Eleonora Zorzan, Eugenio Gaudio, Francesco Bertoni, Mauro Dacasto, Mery Giantin

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Hypermethylation-Mediated Silencing ofInternational journal of molecular sciences · 2022
    Article
  3. Epigenetic Mechanisms in Canine Cancer.Frontiers in oncology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Silvia Da RosDepartment of Comparative Biomedicine and Food Science, University of Padova, Padova, Italy.
Luca AresuDepartment of Veterinary Sciences, University of Turin, Turin, Italy.
Serena FerraressoDepartment of Comparative Biomedicine and Food Science, University of Padova, Padova, Italy.
Eleonora ZorzanDepartment of Comparative Biomedicine and Food Science, University of Padova, Padova, Italy.
Eugenio GaudioUniversità della Svizzera italiana, Institute of Oncology Research, Bellinzona, Switzerland.
Francesco BertoniUniversità della Svizzera italiana, Institute of Oncology Research, Bellinzona, Switzerland.ORCID 0000-0001-5637-8983
Mauro DacastoDepartment of Comparative Biomedicine and Food Science, University of Padova, Padova, Italy.
Mery GiantinDepartment of Comparative Biomedicine and Food Science, University of Padova, Padova, Italy.ORCID 0000-0003-0015-3800
University of Padua · ITInstitute of Oncology Research · CHUniversity of Turin · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite canine B-cell Lymphoma (BCL) representing the most common haematological tumour, epigenetic events driving development and progression are scarcely known. Recently, canine Diffuse Large BCL (DLBCL) DNA methylome by genome-wide CpG microarray has identified genes and pathways associated to pathogenesis. To validate data previously obtained by array analysis, the CLBL-1 cell line was used and the HOXD10, FGFR2, ITIH5 and RASAL3 genes were selected. CLBL-1 cells were treated with two hypomethylating drugs (HDs; IC50, 50% inhibitory concentration), i.e. azacytidine and decitabine (DEC), either alone or in combination with three histone deacetylase inhibitors (HDACis; IC20), i.e. valproic acid, trichostatin and vorinostat. Following the incubation with both HDs, an overall decrease of promoter methylation was highlighted, thus confirming target genes hypermethylation. The highest mRNA restoration was observed following the exposure to HDs combined with HDACis, and mostly with valproic acid. Contrasting results were only obtained for RASAL3. An in vivo confirmation was finally attempted treating Nod-Scid mice engrafted with CLBL-1 cells with DEC. Although DEC did not arrest tumour growth, target genes promoter methylation was significantly reduced in DEC-treated mice vs controls. Overall, this work demonstrates that CLBL-1 cell line represents a reliable in vitro model to validate the methylation-dependent silencing of key genes for BCL; moreover, it may be useful for xenograft models in mice, despite its aggressive behaviour. In future, functional studies will be performed to deepen the role of selected genes on BCL pathogenesis and progression, and their methylation-dependent mechanism of regulation.

Indexed as

Epigenesis, GeneticAnimalsCell Line, TumorDog DiseasesDogsGene Expression Regulation, NeoplasticHistone Deacetylase InhibitorsLymph NodesLymphoma, Large B-Cell, DiffusePromoter Regions, GeneticRNA, MessengerHistone Deacetylase InhibitorsRNA, Messenger

Identifiers

PMID30533020
PMCPMC6289462
OpenAlexW2904009643

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.