Evidence map›Paper›PMID 30532750›Full record

ArticleFrontiers in immunology2018

Identification of CVID Patients With Defects in Immune Repertoire Formation or Specification.

Pauline A van Schouwenburg, Hanna IJspeert, Ingrid Pico-Knijnenburg, Virgil A S H Dalm, P Martin van Hagen, David van Zessen, Andrew P Stubbs, Smita Y Patel, Mirjam van der Burg

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Failure of B Cell Tolerance in CVID.Frontiers in immunology · 2019
    Trial
  2. Article
  3. Article
  4. Article
  5. Review
  6. Turning walking pneumonia into recurrent abscesses: a curious case of CVID and review of the literature.Allergy, asthma, and clinical immunology : official journal of the Canadian Society of Allergy and Clinical Immunology · 2022
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Inborn Errors of Adaptive Immunity in Down Syndrome.Journal of clinical immunology · 2020
    Review
  12. Review
  13. Article
  14. Review
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Pauline A van SchouwenburgDepartment of Immunology, Erasmus MC University Medical Center, Rotterdam, Netherlands.
Hanna IJspeertDepartment of Immunology, Erasmus MC University Medical Center, Rotterdam, Netherlands.
Ingrid Pico-KnijnenburgDepartment of Immunology, Erasmus MC University Medical Center, Rotterdam, Netherlands.
Virgil A S H DalmDepartment of Immunology, Erasmus MC University Medical Center, Rotterdam, Netherlands.
P Martin van HagenDepartment of Immunology, Erasmus MC University Medical Center, Rotterdam, Netherlands.
David van ZessenClinical Bioinformatics Unit, Department of Pathology, Erasmus MC University Medical Center, Rotterdam, Netherlands.
Andrew P StubbsClinical Bioinformatics Unit, Department of Pathology, Erasmus MC University Medical Center, Rotterdam, Netherlands.
Smita Y PatelNuffield Department of Clinical Medicine and Oxford NIHR Biomedical Research Centre, University of Oxford, Oxford, United Kingdom.
Mirjam van der BurgDepartment of Immunology, Erasmus MC University Medical Center, Rotterdam, Netherlands.
Erasmus MC · NLUniversity of Oxford · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Common variable immune deficiency disorder (CVID) is the most clinically relevant cause of antibody failure. It is a highly heterogeneous disease with different underlying etiologies. CVID has been associated with a quantitative B cell defect, however, little is known about the quality of B cells present. Here, we studied the naïve and antigen selected B-cell receptor (BCR) repertoire in 33 CVID patients using next generation sequencing, to investigate B cells quality. Analysis for each individual patient revealed whether they have a defect in immune repertoire formation [V(D)J recombination] or specification (somatic hypermutation, subclass distribution, or selection). The naïve BCR repertoire was normal in most of the patients, although alterations in repertoire diversity and the junctions were found in a limited number of patients indicating possible defects in early B-cell development or V(D)J recombination in these patients. In contrast, major differences were found in the antigen selected BCR repertoire. Here, most patients (15/17) showed a reduced frequency of somatic hypermutation (SHM), changes in subclass distribution and/or minor alterations in antigen selection. Together these data show that in our CVID cohort only a small number of patients have a defect in formation of the naïve BCR repertoire, whereas the clear majority of patients have disturbances in their antigen selected repertoire, suggesting a defect in repertoire specification in the germinal centers of these patients. This highlights that CVID patients not only have a quantitative B cell defect, but that also the quality of, especially post germinal center B cells, is impaired.

Indexed as

AdolescentAdultAgedB-LymphocytesCell DifferentiationChildClonal Selection, Antigen-MediatedCommon Variable ImmunodeficiencyFemaleGerminal CenterHigh-Throughput Nucleotide SequencingHumansLymphocyte ActivationMaleMiddle AgedReceptors, Antigen, B-CellReceptors, Antigen, B-CellB-cell receptor repertoirecommon variable immune deficiency disordergerminal centerrepertoire formationrepertoire specificationsomatic hypermutation

Identifiers

PMID30532750
PMCPMC6265514
OpenAlexW2901538669

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.