Evidence map›Paper›PMID 30532227›Full record

Observational studyPLoS genetics2018

De novo variants in congenital diaphragmatic hernia identify MYRF as a new syndrome and reveal genetic overlaps with other developmental disorders.

Hongjian Qi, Lan Yu, Xueya Zhou, Julia Wynn, Haoquan Zhao, Yicheng Guo, Na Zhu, Alexander Kitaygorodsky, Rebecca Hernan, Gudrun Aspelund and 19 more

Open access · goldAbstract readMulticenter StudyObservational Study
In one paragraph

Observational study in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
13.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 127 citations in OpenAlex.

  1. Article
  2. Review
  3. Mechanical compression causes lung hypoplasia in congenital diaphragmatic hernia with GATA4 genetic variants.American journal of physiology. Lung cellular and molecular physiology · 2026
    Article
  4. Article
  5. Article
  6. A NovelCase reports in pediatrics · 2026
    Article
  7. Non-apoptotic death of thebioRxiv : the preprint server for biology · 2025
    Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Journal of pediatric genetics · 2024
    Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 13 institutions in 2 countries.

Hongjian QiDepartment of Systems Biology, Columbia University Medical Center, New York, New York, United States of America.
Lan YuDepartment of Pediatrics Medical Center, Columbia University, New York, New York, United States of America.
Xueya ZhouDepartment of Systems Biology, Columbia University Medical Center, New York, New York, United States of America.ORCID 0000-0003-2350-081X
Julia WynnDepartment of Pediatrics Medical Center, Columbia University, New York, New York, United States of America.
Haoquan ZhaoDepartment of Systems Biology, Columbia University Medical Center, New York, New York, United States of America.
Yicheng GuoDepartment of Systems Biology, Columbia University Medical Center, New York, New York, United States of America.
Na ZhuDepartment of Systems Biology, Columbia University Medical Center, New York, New York, United States of America.
Alexander KitaygorodskyDepartment of Systems Biology, Columbia University Medical Center, New York, New York, United States of America.ORCID 0000-0002-0804-3529
Rebecca HernanDepartment of Pediatrics Medical Center, Columbia University, New York, New York, United States of America.ORCID 0000-0002-9668-7729
Gudrun AspelundDepartment of Surgery, Columbia University Medical Center, New York, New York, United States of America.
Foong-Yen LimCincinnati Children's Hospital, Cincinnati, Ohio, United States of America.
Timothy CrombleholmeCincinnati Children's Hospital, Cincinnati, Ohio, United States of America.
Robert CusickChildren's Hospital & Medical Center of Omaha, University of Nebraska College of Medicine, Omaha, Nebraska, United States of America.
Kenneth AzarowDepartment of Surgery, Oregon Health & Science University, Portland, Oregon, United States of America.
Melissa E DankoMonroe Carell Jr. Children's Hospital, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Dai ChungMonroe Carell Jr. Children's Hospital, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Brad W WarnerWashington University, St. Louis Children's Hospital, St. Louis, Missouri, United States of America.
George B MychaliskaUniversity of Michigan, CS Mott Children's Hospital, Ann Arbor, Michigan, United States of America.
Douglas PotokaChildren's Hospital of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Amy J WagnerMedical College of Wisconsin, Milwaukee, Wisconsin, United States of America.
Mahmoud ElFikyDepartment of Pediatric Surgery, Faculty of Medicine, Cairo University, Cairo, Egypt.ORCID 0000-0003-1820-8603
Jay M WilsonDepartment of Surgery, Boston Children's Hospital, Boston, Massachusetts, United States of America.
Debbie NickersonUniversity of Washington, Seattle, Washington, United States of America.
Michael BamshadUniversity of Washington, Seattle, Washington, United States of America.ORCID 0000-0002-9647-0861
Frances A HighDepartment of Surgery, Boston Children's Hospital, Boston, Massachusetts, United States of America.
Mauro LongoniDepartment of Surgery, Harvard Medical School, Boston, Massachusetts, United States of America.ORCID 0000-0001-9600-1160
Patricia K DonahoeDepartment of Surgery, Harvard Medical School, Boston, Massachusetts, United States of America.ORCID 0000-0001-5502-4497
Wendy K ChungDepartment of Pediatrics Medical Center, Columbia University, New York, New York, United States of America.
Yufeng ShenDepartment of Systems Biology, Columbia University Medical Center, New York, New York, United States of America.
Columbia University Irving Medical Center · USBoston Children's Hospital · USCincinnati Children's Hospital Medical Center · USHarvard University · USMonroe Carell Jr. Children's Hospital · USUniversity of Washington · USCairo University · EGChildren's Hospital & Medical Center · USChildren's Hospital of Pittsburgh · USMedical College of Wisconsin · USOregon Health & Science University · USSt. Louis Children's Hospital · USUniversity of Michigan · US

Funding

CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR024156 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2006 to 2011
$53.0M
UW Center for Mendelian GenomicsU54HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, NICKERSON, DEBORAH A · 2012 to 2015
$20.0M
THE DROSOPHILA GENETICS AND RNAI CORE (THE FLY CORE)P01HD068250 · NICHD · MASSACHUSETTS GENERAL HOSPITAL · PI CHUNG, WENDY K, DONAHOE, PATRICIA K · 2011 to 2022
$17.1M
Joint Center for Mendelian GenomicsUM1HG008900 · NHGRI · BROAD INSTITUTE, INC. · PI O'DONNELL-LURIA, ANNE, REHM, HEIDI L · 2016 to 2020
$16.5M
UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
A powerful web-based discovery platform for rare disease geneticsR01HG009141 · NHGRI · BROAD INSTITUTE, INC. · PI QUINLAN, AARON R, REHM, HEIDI L · 2017 to 2020
$2.9M
Identification of Novel Genes for Congenital Diaphragmatic HerniaR01HD057036 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ASPELUND, GUDRUN, CHUNG, WENDY K · 2008 to 2012
$2.8M
FGF Signaling in Lung Maturation and Response to InjuryR01HL113870 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI SUN, XIN · 2012 to 2016
$2.1M
Integrate cancer genomics data in geneticstudies and diagnosis of developmental disordersR01GM120609 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SHEN, YUFENG · 2017 to 2021
$1.7M
Genetic analysis of structural birth defects by integration of multiple diseases with epigenomic data and cancer mutationsR03HL138352 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SHEN, YUFENG · 2017 to 2018
$320k
NCRR NIH HHS UL1 RR024156NHGRI NIH HHS R01 HG009141NHGRI NIH HHS U54 HG006493NHGRI NIH HHS UM1 HG006493NHGRI NIH HHS UM1 HG008900NHLBI NIH HHS R01 HL113870NHLBI NIH HHS R03 HL138352NICHD NIH HHS P01 HD068250NICHD NIH HHS R01 HD057036NIGMS NIH HHS R01 GM120609
6 · The paper itself

Abstract

Congenital diaphragmatic hernia (CDH) is a severe birth defect that is often accompanied by other congenital anomalies. Previous exome sequencing studies for CDH have supported a role of de novo damaging variants but did not identify any recurrently mutated genes. To investigate further the genetics of CDH, we analyzed de novo coding variants in 362 proband-parent trios including 271 new trios reported in this study. We identified four unrelated individuals with damaging de novo variants in MYRF (P = 5.3x10(-8)), including one likely gene-disrupting (LGD) and three deleterious missense (D-mis) variants. Eight additional individuals with de novo LGD or missense variants were identified from our other genetic studies or from the literature. Common phenotypes of MYRF de novo variant carriers include CDH, congenital heart disease and genitourinary abnormalities, suggesting that it represents a novel syndrome. MYRF is a membrane associated transcriptional factor highly expressed in developing diaphragm and is depleted of LGD variants in the general population. All de novo missense variants aggregated in two functional protein domains. Analyzing the transcriptome of patient-derived diaphragm fibroblast cells suggest that disease associated variants abolish the transcription factor activity. Furthermore, we showed that the remaining genes with damaging variants in CDH significantly overlap with genes implicated in other developmental disorders. Gene expression patterns and patient phenotypes support pleiotropic effects of damaging variants in these genes on CDH and other developmental disorders. Finally, functional enrichment analysis implicates the disruption of regulation of gene expression, kinase activities, intra-cellular signaling, and cytoskeleton organization as pathogenic mechanisms in CDH.

Indexed as

Genetic VariationMutationChild, PreschoolDevelopmental DisabilitiesDNA Copy Number VariationsExome SequencingFemaleHeart Defects, CongenitalHernias, Diaphragmatic, CongenitalHumansInfant, NewbornLongitudinal StudiesMaleMembrane ProteinsMutation, MissensePhenotypeMembrane ProteinsMyrf protein, humanTranscription Factors

Identifiers

PMID30532227
PMCPMC6301721
OpenAlexW2905150311

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.