Evidence map›Paper›PMID 30532148›Full record

ArticlePloS one2018

A transcriptomics analysis of the Tbx5 paralogues in zebrafish.

Erin A T Boyle Anderson, Robert K Ho

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Article
  6. Exposure to valproic acid (VPA) reproducesmicroPublication biology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Erin A T Boyle AndersonCommittee on Development, Regeneration, and Stem Cell Biology, University of Chicago, Chicago, Illinois, United States of America.
Robert K HoDepartment of Organismal Biology and Anatomy, University of Chicago, Chicago, Illinois, United States of America.
University of Chicago · US

Funding

Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
PREDOCTORAL TRAINING IN GENETICS AND REGULATIONT32GM007197 · NIGMS · UNIVERSITY OF CHICAGO · PI ROTHMAN-DENES, LUCIA B. B · 1985 to 2020
$17.0M
An Animal Model for Human Heart-Hand SyndromesR01HD072598 · NICHD · UNIVERSITY OF CHICAGO · PI HO, ROBERT K · 2013 to 2017
$1.6M
NCATS NIH HHS UL1 TR000430NICHD NIH HHS R01 HD072598NIGMS NIH HHS T32 GM007197
6 · The paper itself

Abstract

TBX5 is essential for limb and heart development. Mutations in TBX5 are associated with Holt-Oram syndrome in humans. Due to the teleost specific genome duplication, zebrafish have two copies of TBX5: tbx5a and tbx5b. Both of these genes are expressed in regions of the lateral plate mesoderm and retina. In this study, we perform comparative RNA sequencing analysis on zebrafish embryos during the stages of lateral plate mesoderm migration. This work shows that knockdown of the Tbx5 paralogues results in altered gene expression in many tissues outside of the lateral plate mesoderm, especially in the somitic mesoderm and the intermediate mesoderm. Specifically, knockdown of tbx5b results in changes in somite size, in the differentiation of vasculature progenitors and in later patterning of trunk blood vessels.

Indexed as

AnimalsComputational BiologyEyeGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Knockdown TechniquesHeartMyocardiumT-Box Domain ProteinsTranscriptomeZebrafishZebrafish ProteinsT-Box Domain ProteinsT-box transcription factor 5Zebrafish Proteins

Identifiers

PMID30532148
PMCPMC6287840
OpenAlexW2903971115

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.