Evidence map›Paper›PMID 30532085›Full record

ArticleScientific data2018

Comparative shotgun metagenomic data of the silkworm Bombyx mori gut microbiome.

Bosheng Chen, Ting Yu, Sen Xie, Kaiqian Du, Xili Liang, Yahua Lan, Chao Sun, Xingmeng Lu, Yongqi Shao

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
8.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 76 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Life inside a bag: multiomics insights into the bagworm species Eumeta crameri.DNA research : an international journal for rapid publication of reports on genes and genomes · 2025
    Article
  5. Article
  6. Article
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  9. Gut bacteria of lepidopteran herbivores facilitate digestion of plant toxins.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. Frontiers in microbiology · 2024
    Article
  12. Article
  13. Review
  14. Reconstruction of Gut Bacteria inJournal of fungi (Basel, Switzerland) · 2023
    Article
  15. Article
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Bosheng ChenInstitute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China.
Ting YuInstitute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China.
Sen XieInstitute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China.
Kaiqian DuInstitute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China.
Xili LiangInstitute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China.
Yahua LanInstitute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China.
Chao SunAnalysis Centre of Agrobiology and Environmental Sciences, Zhejiang University, Hangzhou, China.
Xingmeng LuInstitute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China.
Yongqi ShaoInstitute of Sericulture and Apiculture, College of Animal Sciences, Zhejiang University, Hangzhou, China.
Zhejiang University · CNMinistry of Education of the People's Republic of China · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lepidoptera (butterflies and moths) is a major insect order including important pollinators and agricultural pests, however their microbiomes are little studied. Here, using next-generation sequencing (NGS)-based shotgun metagenomics, we characterize both the biodiversity and functional potential of gut microbiota of a lepidopteran model insect, the silkworm Bombyx mori. Two metagenomes, including the standard inbred strain Dazao (P50) and an improved hybrid strain Qiufeng × Baiyu (QB) widely used in commercial silk production, were generated, containing 45,505,084 and 69,127,002 raw reads, respectively. Taxonomic analysis revealed that a total of 663 bacterial species were identified in P50 silkworms, while 322 unique species in QB silkworms. Notably, Enterobacter, Acinetobacter and Enterococcus were dominated in both strains. The further functional annotation was performed by both BlastP and MG-RAST against various databases including Nr, COG, KEGG, CAZy and SignalP, which revealed >5 × 10

Indexed as

Gastrointestinal MicrobiomeMetagenomicsAcinetobacterAnimalsBombyxEnterobacterEnterococcusGenome, BacterialHigh-Throughput Nucleotide Sequencing

Identifiers

PMID30532085
PMCPMC6289112
OpenAlexW2905025577

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.