Evidence map›Paper›PMID 30532040›Full record

ArticleNature communications2018

Closing the gap between palaeontological and neontological speciation and extinction rate estimates.

Daniele Silvestro, Rachel C M Warnock, Alexandra Gavryushkina, Tanja Stadler

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
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  7. Challenges in estimating species' age from phylogenetic trees.Global ecology and biogeography : a journal of macroecology · 2024
    Article
  8. Article
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  10. The build-up of the present-day tropical diversity of tetrapods.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Cell types as species: Exploring a metaphor.Frontiers in plant science · 2022
    Review
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Daniele SilvestroDepartment of Biological and Environmental Sciences, University of Gothenburg, 41319, Gothenburg, Sweden. daniele.silvestro@bioenv.gu.se.
Rachel C M WarnockSwiss Institute of Bioinformatics (SIB), 1015, Lausanne, Switzerland.
Alexandra GavryushkinaDepartment of Biochemistry, University of Otago, Dunedin, 9054, New Zealand.
Tanja StadlerSwiss Institute of Bioinformatics (SIB), 1015, Lausanne, Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Measuring the pace at which speciation and extinction occur is fundamental to understanding the origin and evolution of biodiversity. Both the fossil record and molecular phylogenies of living species can provide independent estimates of speciation and extinction rates, but often produce strikingly divergent results. Despite its implications, the theoretical reasons for this discrepancy remain unknown. Here, we reveal a conceptual and methodological basis able to reconcile palaeontological and molecular evidence: discrepancies are driven by different implicit assumptions about the processes of speciation and species evolution in palaeontological and neontological analyses. We present the "birth-death chronospecies" model that clarifies the definition of speciation and extinction processes allowing for a coherent joint analysis of fossil and phylogenetic data. Using simulations and empirical analyses we demonstrate not only that this model explains much of the apparent incongruence between fossils and phylogenies, but that differences in rate estimates are actually informative about the prevalence of different speciation modes.

Indexed as

Extinction, BiologicalFossilsGenetic SpeciationAlgorithmsAnimalsCetaceaEvolution, MolecularModels, GeneticPaleontologyPhylogeny

Identifiers

PMID30532040
PMCPMC6286320

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.