Evidence map›Paper›PMID 30532015›Full record

ArticleNature chemistry2019

Rapamycin-inspired macrocycles with new target specificity.

Zufeng Guo, Sam Y Hong, Jingxin Wang, Shahid Rehan, Wukun Liu, Hanjing Peng, Manisha Das, Wei Li, Shridhar Bhat, Brandon Peiffer and 9 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 122 citations in OpenAlex.

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  12. A Convergent Approach to Resorcinolic Macrolides to Expand Structural Diversity.Chemistry (Weinheim an der Bergstrasse, Germany) · 2025
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  13. A Sydnonimine-based Click-and-Release Approach to Cyclic Products.Chemistry (Weinheim an der Bergstrasse, Germany) · 2025
    Article
  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 5 countries.

Zufeng GuoDepartment of Pharmacology and Molecular Sciences, Johns Hopkins School of Medicine, Baltimore, MD, USA.ORCID http://orcid.org/0000-0002-4370-9445
Sam Y HongDepartment of Pharmacology and Molecular Sciences, Johns Hopkins School of Medicine, Baltimore, MD, USA.
Jingxin WangDepartment of Pharmacology and Molecular Sciences, Johns Hopkins School of Medicine, Baltimore, MD, USA.
Shahid RehanHiLIFE and Institute of Biotechnology, University of Helsinki, Helsinki, Finland.
Wukun LiuDepartment of Pharmacology and Molecular Sciences, Johns Hopkins School of Medicine, Baltimore, MD, USA.
Hanjing PengDepartment of Pharmacology and Molecular Sciences, Johns Hopkins School of Medicine, Baltimore, MD, USA.
Manisha DasDepartment of Pharmacology and Molecular Sciences, Johns Hopkins School of Medicine, Baltimore, MD, USA.
Wei LiDepartment of Pharmacology and Molecular Sciences, Johns Hopkins School of Medicine, Baltimore, MD, USA.
Shridhar BhatDepartment of Pharmacology and Molecular Sciences, Johns Hopkins School of Medicine, Baltimore, MD, USA.
Brandon PeifferDepartment of Pharmacology and Molecular Sciences, Johns Hopkins School of Medicine, Baltimore, MD, USA.
Brett R UllmanRapafusyn Pharmaceuticals, Baltimore, MD, USA.
Chung-Ming TseDepartment of Medicine, Division of Gastroenterology and Hepatology, Johns Hopkins School of Medicine, Baltimore, MD, USA.
Zlatina TarmakovaDepartment of Chemistry and Biology, Ryerson University, Toronto, ON, Canada.
Cordelia Schiene-FischerDepartment of Enzymology, Institute for Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Halle/Saale, Germany.
Gunter FischerDepartment of Enzymology, Institute for Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Halle/Saale, Germany.
Imogen CoeDepartment of Chemistry and Biology, Ryerson University, Toronto, ON, Canada.
Ville O PaavilainenHiLIFE and Institute of Biotechnology, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0000-0002-3160-7767
Zhaoli SunDepartment of Surgery, Johns Hopkins School of Medicine, Baltimore, MD, USA.
Jun O LiuDepartment of Pharmacology and Molecular Sciences, Johns Hopkins School of Medicine, Baltimore, MD, USA. joliu@jhu.edu.ORCID http://orcid.org/0000-0003-3842-9841
Johns Hopkins University · USMartin Luther University Halle-Wittenberg · DEToronto Metropolitan University · CAUniversity of Helsinki · FIBaltimore VA Medical Center · USNanjing University of Chinese Medicine · CNScripps Research Institute · USUnited States Food and Drug Administration · US

Funding

Translational Research Enhancement CoreP30DK089502 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI DONOWITZ, MARK · 2011 to 2020
$12.0M
Generation and Proteome-Wide Screening of Hybrid Combinatorial LibrariesDP1CA174428 · NCI · JOHNS HOPKINS UNIVERSITY · PI LIU, JUN O. · 2012 to 2014
$2.4M
Generation and Proteome-Wide Screening of Hybrid Combinatorial LibrariesDP1OD006795 · OD · JOHNS HOPKINS UNIVERSITY · PI LIU, JUN O. · 2010 to 2011
$1.6M
NCI NIH HHS DP1 CA174428NIDDK NIH HHS P30 DK089502NIH HHS DP1 OD006795
6 · The paper itself

Abstract

Rapamycin and FK506 are macrocyclic natural products with an extraordinary mode of action, in which they form binary complexes with FK506-binding protein (FKBP) through a shared FKBP-binding domain before forming ternary complexes with their respective targets, mechanistic target of rapamycin (mTOR) and calcineurin, respectively. Inspired by this, we sought to build a rapamycin-like macromolecule library to target new cellular proteins by replacing the effector domain of rapamycin with a combinatorial library of oligopeptides. We developed a robust macrocyclization method using ring-closing metathesis and synthesized a 45,000-compound library of hybrid macrocycles (named rapafucins) using optimized FKBP-binding domains. Screening of the rapafucin library in human cells led to the discovery of rapadocin, an inhibitor of nucleoside uptake. Rapadocin is a potent, isoform-specific and FKBP-dependent inhibitor of the equilibrative nucleoside transporter 1 and is efficacious in an animal model of kidney ischaemia reperfusion injury. Together, these results demonstrate that rapafucins are a new class of chemical probes and drug leads that can expand the repertoire of protein targets well beyond mTOR and calcineurin.

Indexed as

Acute Kidney InjuryAnimalsCell LineDrug DiscoveryHumansHuman Umbilical Vein Endothelial CellsMacrolidesMiceProtective AgentsProteomeReperfusion InjurySirolimusSwineTacrolimusTacrolimus Binding ProteinsTOR Serine-Threonine KinasesMacrolidesMTOR protein, humanProtective AgentsProteomeSirolimusTacrolimusTacrolimus Binding ProteinsTOR Serine-Threonine Kinases

Identifiers

PMID30532015
PMCPMC6435255
OpenAlexW2902492842

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.