Evidence map›Paper›PMID 30531966›Full record

ArticleNature chemical biology2019

A DNA-based fluorescent reporter maps HOCl production in the maturing phagosome.

Shareefa Thekkan, Maulik S Jani, Chang Cui, Krishna Dan, Guolin Zhou, Lev Becker, Yamuna Krishnan

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
  2. Organelles harbour pH gradients.Research square · 2026
    Article
  3. Review
  4. Organelles harbour pH gradients.bioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Article
  7. Quantitative Chemical Imaging of Organelles.Accounts of chemical research · 2024
    Article
  8. Fe-doped carbon dots: a novel fluorescent nanoprobe for cellular hypochlorous acid imaging.Analytical sciences : the international journal of the Japan Society for Analytical Chemistry · 2024
    Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Tubular lysosomes harbor active ion gradients and poise macrophages for phagocytosis.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Article
  17. Article
  18. Article
  19. Quantitative Imaging of BiochemistryACS central science · 2020
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Shareefa ThekkanDepartment of Chemistry, The University of Chicago, Chicago, IL, USA.
Maulik S JaniDepartment of Chemistry, The University of Chicago, Chicago, IL, USA.
Chang CuiCommittee on Cancer Biology, Ben May Department for Cancer Research, The University of Chicago, Chicago, IL, USA.
Krishna DanDepartment of Chemistry, The University of Chicago, Chicago, IL, USA.
Guolin ZhouBen May Department for Cancer Research, The University of Chicago, Chicago, IL, USA.
Lev BeckerCommittee on Cancer Biology, Ben May Department for Cancer Research, The University of Chicago, Chicago, IL, USA. levb@uchicago.edu.
Yamuna KrishnanDepartment of Chemistry, The University of Chicago, Chicago, IL, USA. yamuna@uchicago.edu.ORCID http://orcid.org/0000-0001-5282-8852
University of Chicago · US

Funding

ULTRASTRUCTURE AND CYTOMORPHOLOGY COREP30DK042086 · NIDDK · UNIVERSITY OF CHICAGO · PI LIU, CAMBRIAN YANGSHAO · 1990 to 2025
$29.8M
'Metabolically Activated' Macrophages in Obesity and Insulin ResistanceR01DK102960 · NIDDK · UNIVERSITY OF CHICAGO · PI BECKER, LEV · 2015 to 2024
$4.4M
NIDDK NIH HHS P30 DK042086NIDDK NIH HHS R01 DK102960
6 · The paper itself

Abstract

Phagocytes destroy pathogens by trapping them in a transient organelle called the phagosome, where they are bombarded with reactive oxygen species (ROS) and reactive nitrogen species (RNS). Imaging reactive species within the phagosome would directly reveal the chemical dynamics underlying pathogen destruction. Here we introduce a fluorescent, DNA-based combination reporter, cHOClate, which simultaneously images hypochlorous acid (HOCl) and pH quantitatively. Using cHOClate targeted to phagosomes in live cells, we successfully map phagosomal production of a specific ROS, HOCl, as a function of phagosome maturation. We found that phagosomal acidification was gradual in macrophages and upon completion, HOCl was released in a burst. This revealed that phagosome-lysosome fusion was essential not only for phagosome acidification, but also for providing the chloride necessary for myeloperoxidase activity. This method can be expanded to image several kinds of ROS and RNS and be readily applied to identify how resistant pathogens evade phagosomal killing.

Indexed as

DNAFluorescent DyesHydrogen-Ion ConcentrationHypochlorous AcidOxidation-ReductionPhagosomesDNAFluorescent DyesHypochlorous Acid

Identifiers

PMID30531966
PMCPMC7034416
OpenAlexW2902634583

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.