Evidence map›Paper›PMID 30531857›Full record

ArticleScientific data2018

Transcriptome profiling of a beach-adapted wild legume for dissecting novel mechanisms of salinity tolerance.

Hengyou Zhang, Christine Zuelsdorf, Darin Penneys, Shoujin Fan, Janice Kofsky, Bao-Hua Song

Abstract readDataset
In one paragraph

Article in Scientific data, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Hengyou ZhangDepartment of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.
Christine ZuelsdorfDepartment of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.
Darin PenneysDepartment of Biology & Marine Biology, University of North Carolina at Willington, Willington, NC 28403, USA.
Shoujin FanKey Laboratory of Plant Stress Research, College of Life Science, Shandong Normal University, Jinan, Shandong 250014, China.
Janice KofskyDepartment of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.
Bao-Hua SongDepartment of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.

Funding

Molecular basis and evolution of complex trait variation with significance in human healthR15GM122029 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI SONG, BAO-HUA · 2016 to 2016
$439k
NIGMS NIH HHS R15 GM122029
6 · The paper itself

Abstract

Strophostyles helvola is a close relative to common bean (Phaseolus vulgaris) and inhabits both coastal and non-coastal regions in North America. However, the mechanism of saline adaptation in S. helvola remains unclear. A transcriptome profiling would facilitate dissecting the underlying molecular mechanisms in salinity-adapted S. helvola. In this study, we reported the RNA-seq analyses of two genotypes (a salt-tolerant beach genotype and a salt-sensitive inland genotype) of S. helvola stressed with salt. S. helvola plants were grown in pots and treated with half lethal-guided dose of NaCl solution for 3 h, 24 h, and 7d. The plants supplied with the same amount of water were used as controls. The whole roots sampled from the three time points were equally pooled as one biological replicate, and three replicates were used for library construction and transcriptome sequencing on Illumina Hiseq 2500. The comparative analyses of root transcriptomes presented here provides a valuable resource for discovery of genes and networks involved in salt tolerance in S. helvola.

Indexed as

Gene Expression ProfilingSalt ToleranceGene Expression Regulation, PlantPhaseolus

Identifiers

PMID30531857
PMCPMC6289113

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.