Evidence map›Paper›PMID 30530702›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

MicroED structures of HIV-1 Gag CTD-SP1 reveal binding interactions with the maturation inhibitor bevirimat.

Michael D Purdy, Dan Shi, Jakub Chrustowicz, Johan Hattne, Tamir Gonen, Mark Yeager

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed.

  1. Trial
  2. Mechanisms of HIV-1 assembly, release and maturation.Nature reviews. Microbiology · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. MicroED in drug discovery.Current opinion in structural biology · 2023
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Michael D PurdyDepartment of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, VA 22908.
Dan ShiJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147.
Jakub ChrustowiczDepartment of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, VA 22908.
Johan HattneJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147.ORCID 0000-0002-8936-0912
Tamir GonenJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147; tgonen@ucla.edu yeager@virginia.edu.
Mark YeagerDepartment of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, VA 22908; tgonen@ucla.edu yeager@virginia.edu.

Funding

X-ray Cryst. CoreP50GM082545 · NIGMS · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2007 to 2018
$51.1M
Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Structure Analysis of Viral Assembly MechanismsR01GM066087 · NIGMS · UNIVERSITY OF VIRGINIA · PI YEAGER, MARK JAY · 2003 to 2014
$4.4M
Structure Analysis of Viral Assembly MechanismsR01GM128507 · NIGMS · UNIVERSITY OF VIRGINIA · PI YEAGER, MARK JAY · 2018 to 2019
$1.5M
Howard Hughes Medical InstituteNIGMS NIH HHS P41 GM103311NIGMS NIH HHS P50 GM082545NIGMS NIH HHS R01 GM066087NIGMS NIH HHS R01 GM128507
6 · The paper itself

Abstract

HIV-1 protease (PR) cleavage of the Gag polyprotein triggers the assembly of mature, infectious particles. Final cleavage of Gag occurs at the junction helix between the capsid protein CA and the SP1 spacer peptide. Here we used MicroED to delineate the binding interactions of the maturation inhibitor bevirimat (BVM) using very thin frozen-hydrated, 3D microcrystals of a CTD-SP1 Gag construct with and without bound BVM. The 2.9-Å MicroED structure revealed that a single BVM molecule stabilizes the six-helix bundle via both electrostatic interactions with the dimethylsuccinyl moiety and hydrophobic interactions with the pentacyclic triterpenoid ring. These results provide insight into the mechanism of action of BVM and related maturation inhibitors that will inform further drug discovery efforts. This study also demonstrates the capabilities of MicroED for structure-based drug design.

Indexed as

Protein ConformationAnti-HIV AgentsCryoelectron MicroscopyCrystallography, X-RayDrug Resistance, Viralgag Gene Products, Human Immunodeficiency VirusHumansModels, MolecularPentacyclic TriterpenesProtein DomainsSuccinatesTriterpenesAnti-HIV Agentsbevirimatgag Gene Products, Human Immunodeficiency VirusPentacyclic TriterpenesSuccinatesTriterpenescryoEMdrug discoveryGagHIV-1maturation inhibitors

Identifiers

PMID30530702
PMCPMC6310804

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.