Evidence map›Paper›PMID 30530698›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Nuclear receptor HNF4A transrepresses CLOCK:BMAL1 and modulates tissue-specific circadian networks.

Meng Qu, Tomas Duffy, Tsuyoshi Hirota, Steve A Kay

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 87 citations in OpenAlex.

  1. Review
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  11. Review
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  13. Hepatocyte Nuclear Factor 4 Alpha: A Key Regulator of Liver Disease Pathology and Haemostatic Disorders.Liver international : official journal of the International Association for the Study of the Liver · 2025
    Review
  14. Article
  15. Liver as a nexus of daily metabolic cross talk.International review of cell and molecular biology · 2025
    Review
  16. Liver-gut axis signaling regulates circadian energy metabolism in shift workers.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
    Article
  17. Article
  18. Article
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  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Meng QuKeck School of Medicine, University of Southern California, Los Angeles, CA 90089.
Tomas DuffyDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037.
Tsuyoshi HirotaInstitute of Transformative Bio-Molecules, Nagoya University, 464-8602 Nagoya, Japan.
Steve A KayKeck School of Medicine, University of Southern California, Los Angeles, CA 90089; stevekay@usc.edu.ORCID 0000-0002-0402-2878
University of Southern California · USNagoya University · JPScripps Research Institute · US

Funding

The Role of Cryptochromes in Circadian Regulation of MetabolismR01DK108087 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KAY, STEVE A · 2016 to 2018
$1.9M
NIDDK NIH HHS R01 DK108087
6 · The paper itself

Abstract

Either expression level or transcriptional activity of various nuclear receptors (NRs) have been demonstrated to be under circadian control. With a few exceptions, little is known about the roles of NRs as direct regulators of the circadian circuitry. Here we show that the nuclear receptor HNF4A strongly transrepresses the transcriptional activity of the CLOCK:BMAL1 heterodimer. We define a central role for HNF4A in maintaining cell-autonomous circadian oscillations in a tissue-specific manner in liver and colon cells. Not only transcript level but also genome-wide chromosome binding of HNF4A is rhythmically regulated in the mouse liver. ChIP-seq analyses revealed cooccupancy of HNF4A and CLOCK:BMAL1 at a wide array of metabolic genes involved in lipid, glucose, and amino acid homeostasis. Taken together, we establish that HNF4A defines a feedback loop in tissue-specific mammalian oscillators and demonstrate its recruitment in the circadian regulation of metabolic pathways.

Indexed as

Circadian RhythmAnimalsARNTL Transcription FactorsCell LineCLOCK ProteinsColonDimerizationDown-RegulationGene Expression RegulationHepatocyte Nuclear Factor 4HumansLiverMaleMiceMice, Inbred C57BLOrgan SpecificityARNTL Transcription FactorsBmal1 protein, mouseClock protein, mouseCLOCK ProteinsHepatocyte Nuclear Factor 4Hnf4a protein, mousecircadian rhythmCLOCK:BMAL1HNF4Anuclear receptortransrepression

Identifiers

PMID30530698
PMCPMC6310821
OpenAlexW2905542779

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.