Evidence map›Paper›PMID 30530678›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Ubiquitin-dependent switch during assembly of the proteasomal ATPases mediated by Not4 ubiquitin ligase.

Xinyi Fu, Vladyslava Sokolova, Kristofor J Webb, William Old, Soyeon Park

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xinyi FuDepartment of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80309.
Vladyslava SokolovaDepartment of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80309.
Kristofor J WebbDepartment of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80309.
William OldDepartment of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80309.
Soyeon ParkDepartment of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80309 soyeon.park-1@colorado.edu.
University of Colorado Boulder · US

Funding

Mechanisms of Chaperone-Mediated Control in the Assembly of the Proteasome HoloenzymeR01GM127688 · NIGMS · UNIVERSITY OF COLORADO · PI PARK, SOYEON · 2018 to 2022
$1.6M
NIGMS NIH HHS R01 GM127688
6 · The paper itself

Abstract

In the proteasome holoenzyme, the hexameric ATPases (Rpt1-Rpt6) enable degradation of ubiquitinated proteins by unfolding and translocating them into the proteolytic core particle. During early-stage proteasome assembly, individual Rpt proteins assemble into the hexameric "Rpt ring" through binding to their cognate chaperones: Nas2, Hsm3, Nas6, and Rpn14. Here, we show that Rpt ring assembly employs a specific ubiquitination-mediated control. An E3 ligase, Not4, selectively ubiquitinates Rpt5 during Rpt ring assembly. To access Rpt5, Not4 competes with Nas2 until the penultimate step and then with Hsm3 at the final step of Rpt ring completion. Using the known Rpt-chaperone cocrystal structures, we show that Not4-mediated ubiquitination sites in Rpt5 are obstructed by Nas2 and Hsm3. Thus, Not4 can distinguish a Rpt ring that matures without these chaperones, based on its accessibility to Rpt5. Rpt5 ubiquitination does not destabilize the ring but hinders incorporation of incoming subunits-Rpn1 ubiquitin receptor and Ubp6 deubiquitinase-thereby blocking progression of proteasome assembly and ubiquitin regeneration from proteasome substrates. Our findings reveal an assembly checkpoint where Not4 monitors chaperone actions during hexameric ATPase ring assembly, thereby ensuring the accuracy of proteasome holoenzyme maturation.

Indexed as

Adenosine TriphosphatasesBinding SitesModels, MolecularMolecular ChaperonesProteasome Endopeptidase ComplexProtein BindingProtein ConformationRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsUbiquitinUbiquitinated ProteinsUbiquitin-Protein LigasesAdenosine TriphosphatasesMolecular ChaperonesMOT2 protein, S cerevisiaeProteasome Endopeptidase ComplexRepressor ProteinsSaccharomyces cerevisiae ProteinsUbiquitinUbiquitinated ProteinsUbiquitin-Protein LigasesAAA+ ATPaseassembly chaperonecheckpointNot4proteasome

Identifiers

PMID30530678
PMCPMC6310792
OpenAlexW2903850014

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.