Evidence map›Paper›PMID 30530625›Full record

ArticleRNA (New York, N.Y.)2019

The human ortholog of archaeal Pus10 produces pseudouridine 54 in select tRNAs where its recognition sequence contains a modified residue.

Manisha Deogharia, Shaoni Mukhopadhyay, Archi Joardar, Ramesh Gupta

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 32 citations in OpenAlex.

  1. Pseudouridine synthase 7 as a context-specific therapeutic target in cancer.The Journal of pharmacology and experimental therapeutics · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Manisha DeoghariaDepartment of Biochemistry and Molecular Biology, Southern Illinois University, Carbondale, Illinois 62901-4413, USA.
Shaoni MukhopadhyayDepartment of Biochemistry and Molecular Biology, Southern Illinois University, Carbondale, Illinois 62901-4413, USA.
Archi JoardarDepartment of Biochemistry and Molecular Biology, Southern Illinois University, Carbondale, Illinois 62901-4413, USA.
Ramesh GuptaDepartment of Biochemistry and Molecular Biology, Southern Illinois University, Carbondale, Illinois 62901-4413, USA rgupta@siumed.edu.
Southern Illinois University Carbondale · US

Funding

RNA SPLICING IN ARCHAEAR15GM055945 · NIGMS · SOUTHERN ILLINOIS UNIVERSITY CARBONDALE · PI GUPTA, RAMESH · 1998 to 2015
$1.3M
NIGMS NIH HHS R15 GM055945
6 · The paper itself

Abstract

The nearly conserved U54 of tRNA is mostly converted to a version of ribothymidine (T) in Bacteria and eukaryotes and to a version of pseudouridine (Ψ) in Archaea. Conserved U55 is nearly always modified to Ψ55 in all organisms. Orthologs of TrmA and TruB that produce T54 and Ψ55, respectively, in Bacteria and eukaryotes are absent in Archaea. Pus10 produces both Ψ54 and Ψ55 in Archaea. Pus10 orthologs are found in nearly all sequenced archaeal and most eukaryal genomes, but not in yeast and bacteria. This coincides with the presence of Ψ54 in most archaeal tRNAs and some animal tRNAs, but its absence from yeast and bacteria. Moreover, Ψ54 is found in several tRNAs that function as primers for retroviral DNA synthesis. Previously, no eukaryotic tRNA Ψ54 synthase had been identified. We show here that human Pus10 can produce Ψ54 in select tRNAs, including tRNA

Indexed as

AnimalsArchaeaArchaeal ProteinsBase SequenceCytoplasmEnzyme ActivationHumansHydro-LyasesMammalsProteolysisPseudouridineRecombinant ProteinsResponse ElementsRNA, ArchaealRNA Processing, Post-TranscriptionalRNA, TransferArchaeal ProteinsHydro-LyasesPseudouridinepseudouridylate synthetaseRecombinant ProteinsRNA, ArchaealRNA, Transfer1-methyladenosinemRNA modificationpseudouridine synthaseretroviral primertRNA modificationTruB

Identifiers

PMID30530625
PMCPMC6380271
OpenAlexW2903584027

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.