Evidence map›Paper›PMID 30530525›Full record

ArticleThe EMBO journal2019

hnRNP L-dependent protection of normal mRNAs from NMD subverts quality control in B cell lymphoma.

Aparna Kishor, Zhiyun Ge, J Robert Hogg

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 78 citations in OpenAlex.

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  6. The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
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  17. Cytoskeleton remodeling mediated by circRNA-YBX1 phase separation suppresses the metastasis of liver cancer.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  18. Article
  19. Review
  20. Inhibition of Nonsense-Mediated Decay Induces Nociceptive Sensitization through Activation of the Integrated Stress Response.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Aparna KishorBiochemistry and Biophysics Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA.
Zhiyun GeBiochemistry and Biophysics Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA.
J Robert HoggBiochemistry and Biophysics Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA j.hogg@nih.gov.ORCID 0000-0001-5729-5135
National Institutes of Health · US

Funding

Mechanisms of nonsense-mediated mRNA decay target selectionZIAHL006158 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI HOGG, J ROBERT · 2012 to 2025
$17.9M
6 · The paper itself

Abstract

The human nonsense-mediated mRNA decay pathway (NMD) performs quality control and regulatory functions within complex post-transcriptional regulatory networks. In addition to degradation-promoting factors, efficient and accurate detection of NMD substrates involves proteins that safeguard normal mRNAs. Here, we identify hnRNP L as a factor that protects mRNAs with NMD-inducing features including long 3'UTRs. Using biochemical and transcriptome-wide approaches, we provide evidence that the susceptibility of a given transcript to NMD can be modulated by its 3'UTR length and ability to recruit hnRNP L. Integrating these findings with the previously defined role of polypyrimidine tract binding protein 1 in NMD evasion enables enhanced prediction of transcript susceptibility to NMD. Unexpectedly, this system is subverted in B cell lymphomas harboring translocations that produce BCL2:IGH fusion mRNAs. CRISPR/Cas9 deletion of hnRNP L binding sites near the BCL2 stop codon reduces expression of the fusion mRNAs and induces apoptosis. Together, our data indicate that protection by hnRNP L overrides the presence of multiple 3'UTR introns, allowing these aberrant mRNAs to evade NMD and promoting BCL2 overexpression and neoplasia.

Indexed as

Gene Expression Regulation, NeoplasticNonsense Mediated mRNA Decay3' Untranslated RegionsHeterogeneous-Nuclear Ribonucleoprotein LHeterogeneous-Nuclear RibonucleoproteinsHumansLymphoma, B-CellPolypyrimidine Tract-Binding ProteinProto-Oncogene Proteins c-bcl-2RNA, MessengerTranscriptome3' Untranslated RegionsBCL2 protein, humanHeterogeneous-Nuclear Ribonucleoprotein LHeterogeneous-Nuclear RibonucleoproteinsPolypyrimidine Tract-Binding ProteinProto-Oncogene Proteins c-bcl-2PTBP1 protein, humanRNA, MessengerB cell lymphomaBCL2hnRNP Lnonsense‐mediated mRNA decayUPF1

Identifiers

PMID30530525
PMCPMC6356069
OpenAlexW2903851599

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.