Evidence map›Paper›PMID 30528666›Full record

ArticleInternational journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases2019

Isolation and molecular characterization of dengue virus clinical isolates from pediatric patients in New Delhi.

Meenakshi Kar, Amul Nisheetha, Anuj Kumar, Suraj Jagtap, Jitendra Shinde, Mohit Singla, Saranya M, Awadhesh Pandit, Anmol Chandele, Sushil K Kabra and 5 more

Open access · goldAbstract read
In one paragraph

Article in International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 1 country.

Meenakshi KarTranslational Health Science and Technology Institute, Faridabad, Haryana, India.
Amul NisheethaNational Centre for Biological Sciences, TIFR, Bengaluru, India.
Anuj KumarNational Centre for Biological Sciences, TIFR, Bengaluru, India.
Suraj JagtapDepartment of Chemical Engineering, Indian Institute of Science, Bengaluru, India.
Jitendra ShindeTranslational Health Science and Technology Institute, Faridabad, Haryana, India.
Mohit SinglaDepartment of Pediatrics, All India Institute of Medical Sciences, New Delhi, India.
Saranya MMolecular Biophysics Unit, Indian Institute of Science, Bengaluru, India.
Awadhesh PanditNational Centre for Biological Sciences, TIFR, Bengaluru, India.
Anmol ChandeleICGEB-Emory Vaccine Center, ICGEB Campus, New Delhi, India.
Sushil K KabraDepartment of Pediatrics, All India Institute of Medical Sciences, New Delhi, India.
Sudhir KrishnaNational Centre for Biological Sciences, TIFR, Bengaluru, India.
Rahul RoyDepartment of Chemical Engineering, Indian Institute of Science, Bengaluru, India; Molecular Biophysics Unit, Indian Institute of Science, Bengaluru, India; Center for Biosystems Science and Engineering, Indian Institute of Science, Bengaluru, India.
Rakesh LodhaDepartment of Pediatrics, All India Institute of Medical Sciences, New Delhi, India.
Chitra PattabiramanNational Institute of Mental Health and Neurosciences, Bengaluru, India.
Guruprasad R MedigeshiTranslational Health Science and Technology Institute, Faridabad, Haryana, India. Electronic address: gmedigeshi@thsti.res.in.
National Centre for Biological Sciences · INAll India Institute of Medical Sciences · INIndian Institute of Science Bangalore · INTranslational Health Science and Technology Institute · INInternational Centre for Genetic Engineering and Biotechnology · INNational Institute of Mental Health and Neurosciences · IN

Funding

DBT-Wellcome Trust India Alliance IA/I/13/1/500901DBT-Wellcome Trust India Alliance IA/S(I)/14/1/501291Wellcome Trust
6 · The paper itself

Abstract

objectiveTo characterize the in vitro replication fitness, viral diversity, and phylogeny of dengue viruses (DENV) isolated from Indian patients.

methodsDENV was isolated from whole blood collected from patients by passaging in cell culture. Passage 3 viruses were used for growth kinetics in C6/36 mosquito cells. Parallel efforts also focused on the isolation of DENV RNA from plasma samples of the same patients, which were processed for next-generation sequencing.

resultsIt was possible to isolate 64 clinical isolates of DENV, mostly DENV-2. Twenty-five of these were further used for growth curve analysis in vitro, which showed a wide range of replication kinetics. The highest viral titers were associated with isolates from patients with dengue with warning signs and severe dengue cases. Full genome sequences of 21 DENV isolates were obtained. Genome analysis mapped the circulating DENV-2 strains to the Cosmopolitan genotype.

conclusionsThe replication kinetics of isolates from patients with mild or severe infection did not differ significantly, but the viral titers varied by two orders of magnitude between the isolates, suggesting differences in replication fitness among the circulating DENV-2.

Indexed as

AnimalsBase SequenceChildCulicidaeDengueDengue VirusGenome, ViralGenotypeHigh-Throughput Nucleotide SequencingHumansIndiaPediatricsPhylogenyRNA, ViralRNA, ViralDengue virusGenotypeGrowth curveMutationsPhylogenetics

Identifiers

PMID30528666
PMCPMC6823047
OpenAlexW2903900629

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