Evidence map›Paper›PMID 30528088›Full record

ArticleMolecular therapy : the journal of the American Society of Gene Therapy2019

lncITPF Promotes Pulmonary Fibrosis by Targeting hnRNP-L Depending on Its Host Gene ITGBL1.

Xiaodong Song, Pan Xu, Chao Meng, Chenguang Song, Timothy S Blackwell, Rongrong Li, Hongbo Li, Jinjin Zhang, Changjun Lv

Abstract read
In one paragraph

Article in Molecular therapy : the journal of the American Society of Gene Therapy, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 62 citations in OpenAlex.

  1. Review
  2. Review
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  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. LncRNAActa pharmaceutica Sinica. B · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Epigenetics alternation in lung fibrosis and lung cancer.Frontiers in cell and developmental biology · 2022
    Review
  16. A Novel Regulatory Player in the Innate Immune System: Long Non-Coding RNAs.International journal of molecular sciences · 2021
    Review
  17. Long Noncoding RNAInternational journal of molecular sciences · 2021
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Xiaodong SongDepartment of Respiratory Medicine, Affiliated Hospital to Binzhou Medical University, Binzhou 256602, China; Department of Cellular and Genetic Medicine, School of Pharmaceutical Sciences, Binzhou Medical University, Yantai 264003, China.
Pan XuDepartment of Respiratory Medicine, Affiliated Hospital to Binzhou Medical University, Binzhou 256602, China.
Chao MengDepartment of Respiratory Medicine, Affiliated Hospital to Binzhou Medical University, Binzhou 256602, China.
Chenguang SongDepartment of Respiratory Medicine, Zouping Chinese Medicine Hospital, Binzhou 256602, China.
Timothy S BlackwellVanderbilt University Medical Center, Nashville, TN 37232, USA.
Rongrong LiDepartment of Respiratory Medicine, Affiliated Hospital to Binzhou Medical University, Binzhou 256602, China.
Hongbo LiDepartment of Respiratory Medicine, Affiliated Hospital to Binzhou Medical University, Binzhou 256602, China.
Jinjin ZhangDepartment of Respiratory Medicine, Affiliated Hospital to Binzhou Medical University, Binzhou 256602, China; Department of Cellular and Genetic Medicine, School of Pharmaceutical Sciences, Binzhou Medical University, Yantai 264003, China. Electronic address: jjinzhang@126.com.
Changjun LvDepartment of Respiratory Medicine, Affiliated Hospital to Binzhou Medical University, Binzhou 256602, China; Department of Cellular and Genetic Medicine, School of Pharmaceutical Sciences, Binzhou Medical University, Yantai 264003, China. Electronic address: lucky_lcj@sina.com.
Binzhou Medical University · CNBinzhou University · CNVanderbilt University Medical Center · US

Funding

Mechanisms of Familial Pulmonary FibrosisP01HL092870 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BLACKWELL, TIMOTHY S. · 2010 to 2020
$21.6M
NHLBI NIH HHS P01 HL092870
6 · The paper itself

Abstract

The role of long non-coding RNA (lncRNA) in idiopathic pulmonary fibrosis (IPF) is poorly understood. We found a novel lncRNA-ITPF that was upregulated in IPF. Bioinformatics and in vitro translation verified that lncITPF is an actual lncRNA, and its conservation is in evolution. Northern blot and rapid amplification of complementary DNA ends were used to analyze the full-length sequence of lncITPF. RNA fluorescence in situ hybridization and nucleocytoplasmic separation demonstrated that lncITPF was mainly located in the nucleus. RNA sequencing, chromatin immunoprecipitation (ChIP)-qPCR, CRISPR-Cas9 technology, and promoter activity analysis showed that the fibrotic function of lncITPF depends on its host gene integrin β-like 1 (ITGBL1), but they did not share the same promoter and were not co-transcribed. Luciferase activity, pathway inhibitors, and ChIP-qPCR showed that smad2/3 binds to the lncITPF promoter, and TGF-β1-smad2/3 was the upstream inducer of the fibrotic pathway. Furthermore, RNA-protein pull-down, liquid chromatography-mass spectrometry (LC-MS), and protein-RNA immunoprecipitation showed that lncITPF regulated H3 and H4 histone acetylation in the ITGBL1 promoter by targeting heterogeneous nuclear ribonucleoprotein L. Finally, sh-lncITPF was used to evaluate the therapeutic effect of lncITPF. Clinical analysis showed that lncITPF is associated with the clinicopathological features of IPF patients. Our findings provide a therapeutic target or diagnostic biomarker for IPF.

Indexed as

AgedAnimalsBlotting, NorthernBlotting, WesternCell LineCell MovementChromatin ImmunoprecipitationChromatography, LiquidCRISPR-Cas SystemsFemaleFluorescent Antibody TechniqueHeterogeneous-Nuclear Ribonucleoprotein LHumansIdiopathic Pulmonary FibrosisImmunoprecipitationIn Situ HybridizationHeterogeneous-Nuclear Ribonucleoprotein LRNA, Long NoncodingCRISPR-Cas9 technologyIPFITGBL1lncITPFlncRNARNA-protein pull-downRNA-sequencingTGF-β1-smad2/3

Identifiers

PMID30528088
PMCPMC6369732
OpenAlexW2889869092

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.