Evidence map›Paper›PMID 30526872›Full record

ArticleMolecular cell2018

Recognition of the Diglycine C-End Degron by CRL2

Domniţa-Valeria Rusnac, Hsiu-Chuan Lin, Daniele Canzani, Karena X Tien, Thomas R Hinds, Ashley F Tsue, Matthew F Bush, Hsueh-Chi S Yen, Ning Zheng

Abstract read
In one paragraph

Article in Molecular cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Degrons: defining the rules of protein degradation.Nature reviews. Molecular cell biology · 2025
    Review
  7. Article
  8. bioRxiv : the preprint server for biology · 2025
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Selenoprotein K at the intersection of cellular pathways.Archives of biochemistry and biophysics · 2025
    Review
  14. Virtual screening: hope, hype, and the fine line in between.Expert opinion on drug discovery · 2025
    Review
  15. Article
  16. Article
  17. Article
  18. N-degron pathways.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Domniţa-Valeria RusnacHoward Hughes Medical Institute, Department of Pharmacology, University of Washington, Seattle, WA 98195, USA.
Hsiu-Chuan LinInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan; Genome and Systems Biology Degree Program, National Taiwan University and Academia Sinica, Taipei 10617, Taiwan.
Daniele CanzaniDepartment of Chemistry, University of Washington, Seattle, WA 98195, USA.
Karena X TienHoward Hughes Medical Institute, Department of Pharmacology, University of Washington, Seattle, WA 98195, USA.
Thomas R HindsHoward Hughes Medical Institute, Department of Pharmacology, University of Washington, Seattle, WA 98195, USA.
Ashley F TsueHoward Hughes Medical Institute, Department of Pharmacology, University of Washington, Seattle, WA 98195, USA.
Matthew F BushDepartment of Chemistry, University of Washington, Seattle, WA 98195, USA.
Hsueh-Chi S YenInstitute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan; Genome and Systems Biology Degree Program, National Taiwan University and Academia Sinica, Taipei 10617, Taiwan.
Ning ZhengHoward Hughes Medical Institute, Department of Pharmacology, University of Washington, Seattle, WA 98195, USA. Electronic address: nzheng@uw.edu.

Funding

Pharmacological Sciences SupplementT32GM007750 · NIGMS · UNIVERSITY OF WASHINGTON · PI ATKINS, WILLIAM M · 1985 to 2023
$12.6M
TRAINING IN MOLECULAR BIOPHYSICST32GM008268 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M, ZHENG, NING · 1988 to 2023
$8.6M
Howard Hughes Medical InstituteNIGMS NIH HHS T32 GM007750NIGMS NIH HHS T32 GM008268
6 · The paper itself

Abstract

Aberrant proteins can be deleterious to cells and are cleared by the ubiquitin-proteasome system. A group of C-end degrons that are recognized by specific cullin-RING ubiquitin E3 ligases (CRLs) has recently been identified in some of these abnormal polypeptides. Here, we report three crystal structures of a CRL2 substrate receptor, KLHDC2, in complex with the diglycine-ending C-end degrons of two early-terminated selenoproteins and the N-terminal proteolytic fragment of USP1. The E3 recognizes the degron peptides in a similarly coiled conformation and cradles their C-terminal diglycine with a deep surface pocket. By hydrogen bonding with multiple backbone carbonyls of the peptides, KLHDC2 further locks in the otherwise degenerate degrons with a compact interface and unexpected high affinities. Our results reveal the structural mechanism by which KLHDC2 recognizes the simplest C-end degron and suggest a functional necessity of the E3 to tightly maintain the low abundance of its select substrates.

Indexed as

Amino Acid SequenceAnimalsAntigens, NeoplasmBaculoviridaeBinding SitesCloning, MolecularCrystallography, X-RayEscherichia coliGene ExpressionGenetic VectorsGlycylglycineHEK293 CellsHumansKineticsMolecular Docking SimulationProteasome Endopeptidase ComplexAntigens, NeoplasmGlycylglycineKLHDC2 protein, humanProteasome Endopeptidase ComplexRecombinant Proteinsselenoprotein K, humanSelenoproteinsUbiquitin-Specific ProteasesUSP1 protein, humanC-end degroncrystal structurecullinDesCENDE3KLHDC2protein degradationselenoproteinsubiquitinUSP1

Identifiers

PMID30526872
PMCPMC6294321

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.