Evidence map›Paper›PMID 30526585›Full record

ArticleBMC medical genetics2018

Conservation analysis and pathogenicity prediction of mutant genes of ectodysplasin a.

Fangqi He, Hongfeng Wang, Xiaoyu Zhang, Qingping Gao, Feng Guo, Chang Chen

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Evidence of Selection in the Ectodysplasin Pathway among Endangered Aquatic Mammals.Integrative organismal biology (Oxford, England) · 2022
    Article
  5. Article
  6. PathogenicFrontiers in genetics · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Fangqi HeDepartment of Prosthodontics, Xiangya Hospital, Central South University, Changsha, 410008, Hunan, China.
Hongfeng WangDepartment of Prosthodontics, Xiangya Hospital, Central South University, Changsha, 410008, Hunan, China.
Xiaoyu ZhangDepartment of Prosthodontics, Xiangya Hospital, Central South University, Changsha, 410008, Hunan, China.
Qingping GaoDepartment of Prosthodontics, Xiangya Hospital, Central South University, Changsha, 410008, Hunan, China. dentgao@163.com.ORCID 0000-0003-0488-3130
Feng GuoDepartment of Prosthodontics, Xiangya Hospital, Central South University, Changsha, 410008, Hunan, China. dentguo@126.com.
Chang ChenDepartment of Prosthodontics, Changsha Stomatological Hospital, Changsha, 410004, Hunan, China.
Central South University · CNJinan Stomatological Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHypohidrotic ectodermal dysplasia (HED) is a common recessive X-linked hereditary disease that affects the development of ectoderm. Gene mutations of ectodysplasin A (EDA) play key roles in process of this disease. In our preliminary study, three unknown mutation sites (c.878 T > G, c.663-697del and c.587-615del) were detected from the pedigrees of HED.

methodsConservation analysis of the related homologous proteins in 3 unknown EDA gene mutation sites was conducted using the University of California Santa Cruz (UCSC) Genome Browser database. SIFT and PolyPhen-2, the online gene function prediction software, were utilized to predict the pathogenicity of point mutation of c.878 T > G.

resultsAll three unknown mutation sites were located in the highly-conserved region of EDA and possessed strong amino acid conservation among different species. In addition, the results of the pathogenicity prediction of point mutation of c.878 T > G by SIFT (P = 0.00) and PolyPhen-2 (S = 0.997) demonstrated that the mutation site had considerable pathogenicity theoretically.

conclusionsThe EDA mutations of c.878 T > G, c.663-697del and c.587-615del may be responsible for the pathogenesis of HED in their pedigrees.

Indexed as

MutationAdultAmino Acid SequenceAnimalsBase SequenceChildComputational BiologyConserved SequenceDatabases, GeneticEctodermal Dysplasia, Hypohidrotic, Autosomal RecessiveEctodysplasinsGene ExpressionHumansMalePedigreeEctodysplasinsEDA protein, humanConservationEctodysplasin a geneGene mutationHypohidrotic ectodermal dysplasiaPathogenicityRelated homologous proteins

Identifiers

PMID30526585
PMCPMC6286515
OpenAlexW2904476990

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.