Evidence map›Paper›PMID 30525581›Full record

ArticleJournal of medicinal chemistry2019

Molecular Mechanism of Inhibition of Acid Ceramidase by Carmofur.

Alexey Dementiev, Andrzej Joachimiak, Ha Nguyen, Alexei Gorelik, Katalin Illes, Saman Shabani, Michael Gelsomino, Eun-Young Erin Ahn, Bhushan Nagar, Ninh Doan

Abstract read
In one paragraph

Article in Journal of medicinal chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Drug Resistance: The Role of Sphingolipid Metabolism.International journal of molecular sciences · 2025
    Review
  8. Article
  9. Beware ofMolecules (Basel, Switzerland) · 2024
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Targeting the Sphingolipid Rheostat in Gliomas.International journal of molecular sciences · 2022
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Alexey DementievStructural Biology Center, Biosciences Division , Argonne National Laboratory , Lemont , Illinois 60439 , United States.
Andrzej JoachimiakStructural Biology Center, Biosciences Division , Argonne National Laboratory , Lemont , Illinois 60439 , United States.
Ha NguyenCalifornia Institute of Neuroscience , Thousand Oaks , California 91360 , United States.
Alexei GorelikDepartment of Biochemistry and Groupe de Recherche Axé sur la Structure des Protéines , McGill University , Montreal , Quebec H3G 0B1 , Canada.
Katalin IllesDepartment of Biochemistry and Groupe de Recherche Axé sur la Structure des Protéines , McGill University , Montreal , Quebec H3G 0B1 , Canada.
Saman ShabaniDepartment of Neurosurgery , Medical College of Wisconsin , Milwaukee , Wisconsin 53226 , United States.
Michael GelsominoDepartment of Neurosurgery , Medical College of Wisconsin , Milwaukee , Wisconsin 53226 , United States.
Eun-Young Erin AhnDepartment of Neurosurgery, Mitchell Cancer Institute , University of South Alabama , Mobile , Alabama 36617 United States.
Bhushan NagarDepartment of Biochemistry and Groupe de Recherche Axé sur la Structure des Protéines , McGill University , Montreal , Quebec H3G 0B1 , Canada.
Ninh DoanDepartment of Neurosurgery, Mitchell Cancer Institute , University of South Alabama , Mobile , Alabama 36617 United States.ORCID 0000-0001-9211-2162

Funding

SON-mediated gene expression and leukemiaR01CA190688 · NCI · UNIVERSITY OF SOUTH ALABAMA · PI AHN, ERIN EUN-YOUNG · 2016 to 2021
$1.7M
NCI NIH HHS R01 CA190688
6 · The paper itself

Abstract

Human acid ceramidase (AC) is a lysosomal cysteine amidase, which has received a great deal of interest in recent years as a potential target for the development of new therapeutics against melanoma and glioblastoma tumors. Despite the strong interest in obtaining structural information, only the structures of the apo-AC enzyme in its zymogen and activated conformations are available. In this work, the crystal structure of AC in complex with the covalent carmofur inhibitor is presented. Carmofur is an antineoplastic drug containing an electrophilic carbonyl reactive group that targets the catalytic cysteine. This novel structural data explains the basis of the AC inhibition, provides insights into the enzymatic properties of the protein, and is a great aid toward the structure-based drug design of potent inhibitors for AC, providing the detailed mechanism, which has eluded the scientific community for more than 30 years, of carmofur's mysterious 5-fluorouracil-independent antitumor activity.

Indexed as

Molecular Dynamics SimulationAcid CeramidaseAntineoplastic AgentsBinding SitesCrystallography, X-RayFluorouracilHumansProtein BindingProtein Structure, TertiaryRecombinant ProteinsAcid CeramidaseAntineoplastic AgentscarmofurFluorouracilRecombinant Proteins

Identifiers

PMID30525581
PMCPMC6863082

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.