Evidence map›Paper›PMID 30523716›Full record

ArticleJournal of clinical oncology : official journal of the American Society of Clinical Oncology2019

Double-Hit Gene Expression Signature Defines a Distinct Subgroup of Germinal Center B-Cell-Like Diffuse Large B-Cell Lymphoma.

Daisuke Ennishi, Aixiang Jiang, Merrill Boyle, Brett Collinge, Bruno M Grande, Susana Ben-Neriah, Christopher Rushton, Jeffrey Tang, Nicole Thomas, Graham W Slack and 20 more

Abstract read
In one paragraph

Article in Journal of clinical oncology : official journal of the American Society of Clinical Oncology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 236 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
236citing papers in PubMed, 1 pooled it
25.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

236 citing papers in PubMed, 1 synthesis or guideline pooled it, 409 citations in OpenAlex.

  1. A genetic profiling guideline to support diagnosis and clinical management of lymphomas.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2024
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176 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors at 5 institutions in 2 countries.

Daisuke Ennishi1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Aixiang Jiang1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Merrill Boyle1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Brett Collinge1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Bruno M Grande2 Simon Fraser University, Burnaby, British Columbia, Canada.
Susana Ben-Neriah1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Christopher Rushton2 Simon Fraser University, Burnaby, British Columbia, Canada.
Jeffrey Tang2 Simon Fraser University, Burnaby, British Columbia, Canada.
Nicole Thomas2 Simon Fraser University, Burnaby, British Columbia, Canada.
Graham W Slack1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Pedro Farinha1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Katsuyoshi Takata1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Tomoko Miyata-Takata1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Jeffrey Craig1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Anja Mottok3 Institute of Human Genetics, Ulm University and Ulm University Medical Center, Ulm, Germany.
Barbara Meissner1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Saeed Saberi4 Molecular Oncology, British Columbia Cancer, Vancouver, British Columbia, Canada.
Ali Bashashati4 Molecular Oncology, British Columbia Cancer, Vancouver, British Columbia, Canada.
Diego Villa1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Kerry J Savage1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Laurie H Sehn1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Robert Kridel5 Princess Margaret Cancer Center-University Health Network, Toronto, Ontario, Canada.
Andrew J Mungall6 Genome Sciences Center, British Columbia Cancer Agency, Vancouver, British Columbia, Canada.
Marco A Marra6 Genome Sciences Center, British Columbia Cancer Agency, Vancouver, British Columbia, Canada.
Sohrab P Shah4 Molecular Oncology, British Columbia Cancer, Vancouver, British Columbia, Canada.
Christian Steidl1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Joseph M Connors1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Randy D Gascoyne1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Ryan D Morin2 Simon Fraser University, Burnaby, British Columbia, Canada.
David W Scott1 British Columbia Cancer Centre for Lymphoid Cancer, Vancouver, British Columbia, Canada.
Spinal Cord Injury BC · CASimon Fraser University · CABC Cancer Agency · CAPrincess Margaret Cancer Centre · CAUniversität Ulm · DE

Funding

Preclinical Models and Therapeutics CoreP01CA229100 · NCI · MAYO CLINIC ARIZONA · PI INGHIRAMI, GIORGIO · 2018 to 2022
$10.2M
CIHR 300738CIHR GPH-129347NCI NIH HHS P01 CA229100
6 · The paper itself

Abstract

purposeHigh-grade B-cell lymphoma with MYC and BCL2 and/or BCL6 rearrangements (HGBL-DH/TH) has a poor outcome after standard chemoimmunotherapy. We sought to understand the biologic underpinnings of HGBL-DH/TH with BCL2 rearrangements (HGBL-DH/TH- BCL2) and diffuse large B-cell lymphoma (DLBCL) morphology through examination of gene expression. PATIENTS AND

methodsWe analyzed RNA sequencing data from 157 de novo germinal center B-cell-like (GCB)-DLBCLs, including 25 with HGBL-DH/TH- BCL2, to define a gene expression signature that distinguishes HGBL-DH/TH- BCL2 from other GCB-DLBCLs. To assess the genetic, molecular, and phenotypic features associated with this signature, we analyzed targeted resequencing, whole-exome sequencing, RNA sequencing, and immunohistochemistry data.

resultsWe developed a 104-gene double-hit signature (DHITsig) that assigned 27% of GCB-DLBCLs to the DHITsig-positive group, with only one half harboring MYC and BCL2 rearrangements (HGBL-DH/TH- BCL2). DHITsig-positive patients had inferior outcomes after rituximab plus cyclophosphamide, doxorubicin, vincristine, and prednisone immunochemotherapy compared with DHITsig-negative patients (5-year time to progression rate, 57% and 81%, respectively; P < .001), irrespective of HGBL-DH/TH- BCL2 status. The prognostic value of DHITsig was confirmed in an independent validation cohort. DHITsig-positive tumors are biologically characterized by a putative non-light zone germinal center cell of origin and a distinct mutational landscape that comprises genes associated with chromatin modification. A new NanoString assay (DLBCL90) recapitulated the prognostic significance and RNA sequencing assignments. Validating the association with HGBL-DH/TH- BCL2, 11 of 25 DHITsig-positive-transformed follicular lymphomas were classified as HGBL-DH/TH- BCL2 compared with zero of 50 in the DHITsig-negative group. Furthermore, the DHITsig was shared with the majority of B-cell lymphomas with high-grade morphology tested.

conclusionWe have defined a clinically and biologically distinct subgroup of tumors within GCB-DLBCL characterized by a gene expression signature of HGBL-DH/TH- BCL2. This knowledge has been translated into an assay applicable to routinely available biopsy samples, which enables exploration of its utility to guide patient management.

Indexed as

AdultAgedAged, 80 and overAntibodies, Monoclonal, Murine-DerivedAntineoplastic Combined Chemotherapy ProtocolsCyclophosphamideDoxorubicinFemaleGene RearrangementGerminal CenterHumansLymphoma, B-CellLymphoma, Large B-Cell, DiffuseMaleMiddle AgedPrednisoneAntibodies, Monoclonal, Murine-DerivedBCL2 protein, humanCyclophosphamideDoxorubicinMYC protein, humanPrednisoneProto-Oncogene Proteins c-bcl-2Proto-Oncogene Proteins c-mycR-CHOP protocolRituximabRNA, NeoplasmVincristine

Identifiers

PMID30523716
PMCPMC6804880
OpenAlexW2903278833

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.