Evidence map›Paper›PMID 30523675›Full record

ArticleCytometry. Part A : the journal of the International Society for Analytical Cytology2019

Improving Quality, Reproducibility, and Usability of FRET-Based Tension Sensors.

Evan M Gates, Andrew S LaCroix, Katheryn E Rothenberg, Brenton D Hoffman

Abstract read
In one paragraph

Article in Cytometry. Part A : the journal of the International Society for Analytical Cytology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
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  7. Coupling during collective cell migration is controlled by a vinculin mechanochemical switch.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  18. Evaluation of Caspase-3 Activity During Apoptosis with Fluorescence Lifetime-Based Cytometry Measurements and Phasor Analyses.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2020
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Evan M GatesDepartment of Biomedical Engineering, Duke University, Durham, North Carolina, 27708.
Andrew S LaCroixDepartment of Biomedical Engineering, Duke University, Durham, North Carolina, 27708.
Katheryn E RothenbergDepartment of Biomedical Engineering, Duke University, Durham, North Carolina, 27708.
Brenton D HoffmanDepartment of Biomedical Engineering, Duke University, Durham, North Carolina, 27708.

Funding

Mechanotransduction in Multicellular SystemsR01GM121739 · NIGMS · DUKE UNIVERSITY · PI HOFFMAN, BRENTON D · 2018 to 2022
$1.5M
Visualizing and Elucidating the Role of Force on Type IV Collagen in DevelopmentR21HD084290 · NICHD · DUKE UNIVERSITY · PI SHERWOOD, DAVID R · 2016 to 2017
$412k
Elucidating the Role of Mechanosensitive Signaling in Mediating Cell-Biomaterial InteractionsR21EB022166 · NIBIB · DUKE UNIVERSITY · PI HOFFMAN, BRENTON D · 2016 to 2017
$412k
NIBIB NIH HHS R21 EB022166NICHD NIH HHS R21 HD084290NIGMS NIH HHS R01 GM121739
6 · The paper itself

Abstract

Mechanobiology, the study of how mechanical forces affect cellular behavior, is an emerging field of study that has garnered broad and significant interest. Researchers are currently seeking to better understand how mechanical signals are transmitted, detected, and integrated at a subcellular level. One tool for addressing these questions is a Förster resonance energy transfer (FRET)-based tension sensor, which enables the measurement of molecular-scale forces across proteins based on changes in emitted light. However, the reliability and reproducibility of measurements made with these sensors has not been thoroughly examined. To address these concerns, we developed numerical methods that improve the accuracy of measurements made using sensitized emission-based imaging. To establish that FRET-based tension sensors are versatile tools that provide consistent measurements, we used these methods, and demonstrated that a vinculin tension sensor is unperturbed by cell fixation, permeabilization, and immunolabeling. This suggests FRET-based tension sensors could be coupled with a variety of immuno-fluorescent labeling techniques. Additionally, as tension sensors are frequently employed in complex biological samples where large experimental repeats may be challenging, we examined how sample size affects the uncertainty of FRET measurements. In total, this work establishes guidelines to improve FRET-based tension sensor measurements, validate novel implementations of these sensors, and ensure that results are precise and reproducible. © 2018 International Society for Advancement of Cytometry.

Indexed as

AnimalsBiosensing TechniquesCell LineFluorescence Resonance Energy TransferMiceReproducibility of ResultsVinculinVinculinFRET-based biosensorFRET efficiencymechanotransductionsensitized emission

Identifiers

PMID30523675
PMCPMC6375766

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.