Evidence map›Paper›PMID 30523311›Full record

ArticleMucosal immunology2019

Microanatomical dissection of human intestinal T-cell immunity reveals site-specific changes in gut-associated lymphoid tissues over life.

Takashi Senda, Pranay Dogra, Tomer Granot, Kazuhiro Furuhashi, Mark E Snyder, Dustin J Carpenter, Peter A Szabo, Puspa Thapa, Michelle Miron, Donna L Farber

Open access · bronzeAbstract read
In one paragraph

Article in Mucosal immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed, 1 pooled it
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 1 synthesis or guideline pooled it, 106 citations in OpenAlex.

  1. Pooled it
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  6. Immune development in early life.Nature immunology · 2026
    Review
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  8. Fibroblast diversity within human gut-associated lymphoid tissues.The Journal of experimental medicine · 2026
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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Takashi SendaColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY, 10032, USA.
Pranay DograColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY, 10032, USA.
Tomer GranotColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY, 10032, USA.
Kazuhiro FuruhashiColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY, 10032, USA.
Mark E SnyderColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY, 10032, USA.
Dustin J CarpenterColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY, 10032, USA.
Peter A SzaboColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY, 10032, USA.
Puspa ThapaColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY, 10032, USA.
Michelle MironColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY, 10032, USA.
Donna L FarberColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY, 10032, USA. df2396@cumc.columbia.edu.
Columbia University Irving Medical Center · US

Funding

Transcriptomics and Repertoire ProfilingP01AI106697 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Donna L. Farber · 2013 to 2026
$31.3M
Development of lung T cell responses in infant respiratory immunityU01AI100119 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FARBER, DONNA L. · 2017 to 2021
$3.9M
Development of lung T cell responses in infant respiratory immunityR01AI100119 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FARBER, DONNA L. · 2012 to 2016
$2.6M
Columbia University Graduate Training Program in Microbiology and ImmunologyT32AI106711 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Nicholas Arpaia, Uttiya Basu · 2014 to 2026
$2.1M
BD Biosciences InfluxS10OD020056 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SNOECK, HANS-WILLEM E · 2015 to 2015
$600k
Becton Dickinson LSR II Analytical Flow CytometerS10RR027050 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CLYNES, RAPHAEL A. · 2011 to 2011
$413k
NCRR NIH HHS S10 RR027050NIAID NIH HHS P01 AI106697NIAID NIH HHS R01 AI100119NIAID NIH HHS T32 AI106711NIAID NIH HHS U01 AI100119
6 · The paper itself

Abstract

Defining adaptive immunity with the complex structures of the human gastrointestinal (GI) tract over life is essential for understanding immune responses to ingested antigens, commensal and pathogenic microorganisms, and dysfunctions in disease. We present here an analysis of lymphocyte localization and T cell subset composition across the human GI tract including mucosal sites (jejunum, ileum, colon), gut-associated lymphoid tissues (isolated lymphoid follicles (ILFs), Peyer's patches (PPs), appendix), and mesenteric lymph nodes (MLNs) from a total of 68 donors spanning eight decades of life. In pediatric donors, ILFs and PP containing naïve T cells and regulatory T cells (Tregs) are prevalent in the jejunum and ileum, respectively; these decline in frequency with age, contrasting stable frequencies of ILFs and T cell subsets in the colon. In the mucosa, tissue resident memory T cells develop during childhood, and persist in high frequencies into advanced ages, while T cell composition changes with age in GALT and MLN. These spatial and temporal features of human intestinal T cell immunity define signatures that can be used to train predictive machine learning algorithms. Our findings demonstrate an anatomic basis for age-associated alterations in immune responses, and establish a quantitative baseline for intestinal immunity to define disease pathologies.

Indexed as

AdultAgingCells, CulturedChildDuodenumHumansIleumImmunity, CellularIntestinal MucosaJejunumLymph NodesOrgan SpecificityPeyer's PatchesT-Lymphocytes, RegulatoryT-Lymphocyte Subsets

Identifiers

PMID30523311
PMCPMC6375790
OpenAlexW2902016030

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.