Evidence map›Paper›PMID 30523281›Full record

ArticleNature communications2018

The genomic landscape of molecular responses to natural drought stress in Panicum hallii.

John T Lovell, Jerry Jenkins, David B Lowry, Sujan Mamidi, Avinash Sreedasyam, Xiaoyu Weng, Kerrie Barry, Jason Bonnette, Brandon Campitelli, Chris Daum and 17 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed, 1 pooled it
17.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 1 synthesis or guideline pooled it, 145 citations in OpenAlex.

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20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 7 institutions in 2 countries.

John T LovellGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, 35806, AL, USA. jlovell@hudsonalpha.org.
Jerry JenkinsGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, 35806, AL, USA.ORCID http://orcid.org/0000-0002-7943-3997
David B LowryDepartment of Plant Biology, Michigan State University, East Lansing, 48824, MI, USA.
Sujan MamidiGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, 35806, AL, USA.ORCID http://orcid.org/0000-0002-3837-6121
Avinash SreedasyamGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, 35806, AL, USA.ORCID http://orcid.org/0000-0001-7336-7012
Xiaoyu WengDepartment of Integrative Biology, The University of Texas at Austin, Austin, 78712, TX, USA.
Kerrie BarryDepartment of Energy, Joint Genome Institute, Walnut Creek, 94598, CA, USA.
Jason BonnetteDepartment of Integrative Biology, The University of Texas at Austin, Austin, 78712, TX, USA.
Brandon CampitelliDepartment of Integrative Biology, The University of Texas at Austin, Austin, 78712, TX, USA.
Chris DaumDepartment of Energy, Joint Genome Institute, Walnut Creek, 94598, CA, USA.
Sean P GordonDepartment of Energy, Joint Genome Institute, Walnut Creek, 94598, CA, USA.ORCID http://orcid.org/0000-0003-3431-5804
Billie A GouldDepartment of Plant Biology, Michigan State University, East Lansing, 48824, MI, USA.
Albina KhasanovaDepartment of Integrative Biology, The University of Texas at Austin, Austin, 78712, TX, USA.
Anna LipzenDepartment of Energy, Joint Genome Institute, Walnut Creek, 94598, CA, USA.
Alice MacQueenDepartment of Integrative Biology, The University of Texas at Austin, Austin, 78712, TX, USA.ORCID http://orcid.org/0000-0002-4606-1832
Juan Diego Palacio-MejíaDepartment of Integrative Biology, The University of Texas at Austin, Austin, 78712, TX, USA.ORCID http://orcid.org/0000-0002-7958-1586
Christopher PlottGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, 35806, AL, USA.
Eugene V ShakirovDepartment of Integrative Biology, The University of Texas at Austin, Austin, 78712, TX, USA.
Shengqiang ShuDepartment of Energy, Joint Genome Institute, Walnut Creek, 94598, CA, USA.ORCID http://orcid.org/0000-0002-4336-8994
Yuko YoshinagaDepartment of Energy, Joint Genome Institute, Walnut Creek, 94598, CA, USA.
Matt ZaneDepartment of Energy, Joint Genome Institute, Walnut Creek, 94598, CA, USA.
Dave KudrnaDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, 85719, AZ, USA.
Jason D TalagDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, 85719, AZ, USA.
Daniel RokhsarDepartment of Molecular and Cell Biology, University of California, Berkeley, 94720, CA, USA.
Jane GrimwoodGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, 35806, AL, USA.
Jeremy SchmutzGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, 35806, AL, USA. jschmutz@hudsonalpha.org.ORCID http://orcid.org/0000-0001-8062-9172
Thomas E JuengerDepartment of Integrative Biology, The University of Texas at Austin, Austin, 78712, TX, USA. tjuenger@austin.utexas.edu.
Joint Genome Institute · USThe University of Texas at Austin · USHudsonAlpha Institute for Biotechnology · USMichigan State University · USUniversity of Arizona · USKazan Federal University · RUUniversity of California, Berkeley · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Environmental stress is a major driver of ecological community dynamics and agricultural productivity. This is especially true for soil water availability, because drought is the greatest abiotic inhibitor of worldwide crop yields. Here, we test the genetic basis of drought responses in the genetic model for C

Indexed as

DroughtsGene Expression Regulation, PlantStress, PhysiologicalGene Regulatory NetworksGenes, PlantGenomicsGenotypePanicumPhylogenyQuantitative Trait LociSpecies Specificity

Identifiers

PMID30523281
PMCPMC6283873
OpenAlexW2903258921

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.