Evidence map›Paper›PMID 30521042›Full record

ArticleNucleic acids research2019

Hexameric assembly of the AAA+ protein McrB is necessary for GTPase activity.

Neha Nirwan, Pratima Singh, Gyana Gourab Mishra, Christopher M Johnson, Mark D Szczelkun, Katsuaki Inoue, Kutti R Vinothkumar, Kayarat Saikrishnan

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Neha NirwanDivision of Biology, Indian Institute of Science Education and Research, Pune 411008, India.
Pratima SinghDivision of Biology, Indian Institute of Science Education and Research, Pune 411008, India.
Gyana Gourab MishraDivision of Biology, Indian Institute of Science Education and Research, Pune 411008, India.
Christopher M JohnsonMRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK.
Mark D SzczelkunDNA-Protein Interactions Unit, School of Biochemistry, Medical Sciences Building, University of Bristol, Bristol BS8 1TD, UK.
Katsuaki InoueDiamond Light Source, Harwell Science and Innovation Campus, Fermi Avenue, Didcot OX11 0DE, UK.
Kutti R VinothkumarMRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK.
Kayarat SaikrishnanDivision of Biology, Indian Institute of Science Education and Research, Pune 411008, India.
Indian Institute of Science Education and Research Pune · INMRC Laboratory of Molecular Biology · GBDiamond Light Source · GBUniversity of Bristol · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

McrBC is one of the three modification-dependent restriction enzymes encoded by the Escherichia coli K12 chromosome. Amongst restriction enzymes, McrBC and its close homologues are unique in employing the AAA+ domain for GTP hydrolysis-dependent activation of DNA cleavage. The GTPase activity of McrB is stimulated by the endonuclease subunit McrC. It had been reported previously that McrB and McrC subunits oligomerise together into a high molecular weight species. Here we conclusively demonstrate using size exclusion chromatography coupled multi-angle light scattering (SEC-MALS) and images obtained by electron cryomicroscopy that McrB exists as a hexamer in solution. Furthermore, based on SEC-MALS and SAXS analyses of McrBC and the structure of McrB, we propose that McrBC is a complex of two McrB hexamers bridged by two subunits of McrC, and that the complete assembly of this complex is integral to its enzymatic activity. We show that the nucleotide-dependent oligomerisation of McrB precedes GTP hydrolysis. Mutational studies show that, unlike other AAA+ proteins, the catalytic Walker B aspartate is required for oligomerisation.

Indexed as

Cryoelectron MicroscopyDNA Restriction EnzymesEscherichia coli ProteinsGTP PhosphohydrolasesGuanosine TriphosphateMutationProtein MultimerizationScattering, Small AngleX-Ray DiffractionDNA Restriction EnzymesEscherichia coli ProteinsGTP PhosphohydrolasesGuanosine TriphosphatemcrB protein, E colimcrC protein, E coli

Identifiers

PMID30521042
PMCPMC6344862
OpenAlexW2902838004

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.