Evidence map›Paper›PMID 30520984›Full record

ArticleRadiation protection dosimetry2019

MODELLING γ-H2AX FOCI INDUCTION TO MIMIC LIMITATIONS IN THE SCORING TECHNIQUE.

Sofia Barbieri, Giorgio Baiocco, Gabriele Babini, Jacopo Morini, Werner Friedland, Manuela Buonanno, Veljko Grilj, David J Brenner, Andrea Ottolenghi

Open access · bronzeAbstract read
In one paragraph

Article in Radiation protection dosimetry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Sofia BarbieriPhysics Department, University of Pavia, Pavia, Italy.
Giorgio BaioccoPhysics Department, University of Pavia, Pavia, Italy.
Gabriele BabiniPhysics Department, University of Pavia, Pavia, Italy.
Jacopo MoriniPhysics Department, University of Pavia, Pavia, Italy.
Werner FriedlandInstitute of Radiation Protection, Department of Radiation Sciences, Helmholtz Zentrum München-German Research Center for Environmental Health (GmbH), Neuherberg, Germany.
Manuela BuonannoCenter for Radiological Research, Columbia University Medical Center, New York, New York, USA.
Veljko GriljCenter for Radiological Research, Columbia University Medical Center, New York, New York, USA.
David J BrennerCenter for Radiological Research, Columbia University Medical Center, New York, New York, USA.
Andrea OttolenghiPhysics Department, University of Pavia, Pavia, Italy.
University of Pavia · ITColumbia University Irving Medical Center · USHelmholtz Zentrum München · DE

Funding

TR&D 3P41EB002033 · NIBIB · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BRENNER, DAVID JONATHAN · 2003 to 2018
$17.0M
NIBIB NIH HHS P41 EB002033
6 · The paper itself

Abstract

An approach based on track-structure calculations has been developed to take account of artefacts occurring during γ-H2AX foci detection in 2D images of samples analyzed through immunocytochemistry. The need of this works stems from the observed saturation in foci yields measured after X-ray doses higher than few grays, hindering an unambiguous quantification of DNA damage and of radiation effectiveness. The proposed modelling approach allows to simulate the observer's point of view for foci scoring, mimicking the selection of a slice Δz of the cell nucleus due to the microscope depth of field, and applying a clustering algorithm to group together damages within a resolution parameter r. Calculation results were benchmarked with experimental measurements at an early time-point for mouse breast cancer cells, irradiated with X-ray doses in the range 0-5 Gy. The model is able to reproduce the saturation in experimental data.

Indexed as

AlgorithmsAnimalsDNA Breaks, Double-StrandedHistonesImmunohistochemistryLinear Energy TransferMammary Neoplasms, ExperimentalMiceMonte Carlo MethodRelative Biological EffectivenessSoftwareTumor Cells, CulturedX-Raysgamma-H2AX protein, mouseHistones

Identifiers

PMID30520984
PMCPMC6525333
OpenAlexW2904002093

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.