Evidence map›Paper›PMID 30519981›Full record

ArticleInternational urology and nephrology2019

Urine proteomic profiling in patients with nephrolithiasis and cystinuria.

Larisa Kovacevic, Joseph A Caruso, Hong Lu, Natalija Kovacevic, Yegappan Lakshmanan, Nicholas J Carruthers, David S Goldfarb

Open access · greenAbstract read
In one paragraph

Article in International urology and nephrology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Proteomics in Inherited Metabolic Disorders.International journal of molecular sciences · 2022
    Review
  6. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Larisa KovacevicDepartment of Pediatric Urology, Children's Hospital of Michigan, 3901 Beaubien Blvd, Detroit, MI, 48201, USA. lkovacev@dmc.org.
Joseph A CarusoInstitute of Environmental Health Sciences, Wayne State University, Detroit, MI, USA.
Hong LuDepartment of Pediatric Urology, Children's Hospital of Michigan, 3901 Beaubien Blvd, Detroit, MI, 48201, USA.
Natalija KovacevicDepartment of Pediatric Urology, Children's Hospital of Michigan, 3901 Beaubien Blvd, Detroit, MI, 48201, USA.
Yegappan LakshmananDepartment of Pediatric Urology, Children's Hospital of Michigan, 3901 Beaubien Blvd, Detroit, MI, 48201, USA.
Nicholas J CarruthersInstitute of Environmental Health Sciences, Wayne State University, Detroit, MI, USA.
David S GoldfarbNephrology Division, New York University Langone Medical Center, New York, NY, USA.
Children's Hospital of Michigan · USWayne State University · USHenry Ford Hospital · USNYU Langone Health · US

Funding

Tumor Biology and Microenvironment (Program 1)P30CA022453 · NCI · WAYNE STATE UNIVERSITY · PI Julie Lynn Boerner · 1985 to 2026
$68.4M
Primary HyperoxaluriaU54DK083908 · NIDDK · MAYO CLINIC ROCHESTER · PI MILLINER, DAWN SCHMAUTZ · 2009 to 2018
$12.3M
Pilot Project ProgramP30ES020957 · NIEHS · WAYNE STATE UNIVERSITY · PI RUDEN, DOUGLAS M · 2014 to 2021
$10.1M
Orbitrap Velos with ETD for Wayne State ProteomicsS10OD010700 · OD · WAYNE STATE UNIVERSITY · PI STEMMER, PAUL M · 2012 to 2012
$575k
NCI NIH HHS P30 CA022453NIDDK NIH HHS U54 DK083908NIEHS NIH HHS P30 ES020957NIH Cancer Center Support Grant P30 CA 022453NIH Center Grant P30 ES 020957NIH HHS S10 OD010700NIH Shared Instrumentation Grant S10 OD 010700Rare Kidney Stone Consortium 5U54DK083908-05
6 · The paper itself

Abstract

purposeThe purpose of the study was to assess the differences in the concentration and function of urinary proteins between patients with cystine stones (CYS) and healthy controls (HC). We postulated that CYS and HC groups would demonstrate different proteomic profiles.

methodsA pilot study was performed comparing urinary proteomes of 10 patients with CYS and 10 age- and gender-matched HC, using liquid chromatography-mass spectrometry. Proteins which met the selection criteria (i) ≥ 2 unique peptide identifications; (ii) ≥ twofold difference in protein abundance; and (iii) ≤ 0.05 p value for the Fisher's Exact Test were analyzed using Gene Ontology classifications.

resultsOf the 2097 proteins identified by proteomic analysis, 398 proteins were significantly different between CYS and HC. Of those, 191 were involved in transport processes and 61 in inflammatory responses. The majority were vesicle-mediated transport proteins (78.5%), and 1/3 of them were down-regulated; of those, 12 proteins were involved in endosomal transport (including 6 charged multivesicular body proteins (CHMP) and 3 vacuolar sorting-associated proteins) and 9 in transmembrane transport. Myosin-2 and two actin-related proteins were significantly up-regulated in the vesicle-mediated transport group.

conclusionWe provide proteomic evidence of impaired endocytosis, dysregulation of actin and myosin cytoskeleton, and inflammation in CYS. Endosomal transport proteins were down-regulated mainly through defective CHMP. These findings may contribute to further understanding of the pathogenesis of CYS, potentially affecting its management.

Indexed as

ProteomeAdultCase-Control StudiesComplement C1CystineCystinuriaDown-RegulationEndosomal Sorting Complexes Required for TransportFemaleGene OntologyHumansInflammationKidney CalculiMaleMiddle AgedPilot ProjectsComplement C1CystineEndosomal Sorting Complexes Required for TransportProteomeVesicular Transport ProteinsCystinuriaNephrolithiasisProteomicsUrine

Identifiers

PMID30519981
PMCPMC6461472
OpenAlexW2903299964

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.