Evidence map›Paper›PMID 30518856›Full record

ArticleNature2018

Dna2 nuclease deficiency results in large and complex DNA insertions at chromosomal breaks.

Yang Yu, Nhung Pham, Bo Xia, Alma Papusha, Guangyu Wang, Zhenxin Yan, Guang Peng, Kaifu Chen, Grzegorz Ira

Open access · greenAbstract read
In one paragraph

Article in Nature, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
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  7. CRISPR/Cas9 as a Mutagenic Factor.International journal of molecular sciences · 2024
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Different classes of genomic inserts contribute to human antibody diversity.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Yang Yu *Baylor College of Medicine, Department of Molecular and Human Genetics, Houston, TX, USA.
Nhung Pham *Baylor College of Medicine, Department of Molecular and Human Genetics, Houston, TX, USA.
Bo Xia *Center for Bioinformatics and Computational Biology, Department of Cardiovascular Sciences, Houston Methodist Research Institute, Houston, TX, USA.
Alma PapushaBaylor College of Medicine, Department of Molecular and Human Genetics, Houston, TX, USA.
Guangyu WangCenter for Bioinformatics and Computational Biology, Department of Cardiovascular Sciences, Houston Methodist Research Institute, Houston, TX, USA.
Zhenxin YanBaylor College of Medicine, Department of Molecular and Human Genetics, Houston, TX, USA.
Guang PengDepartment of Clinical Cancer Prevention, University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Kaifu ChenCenter for Bioinformatics and Computational Biology, Department of Cardiovascular Sciences, Houston Methodist Research Institute, Houston, TX, USA. kchen2@houstonmethodist.org.
Grzegorz IraBaylor College of Medicine, Department of Molecular and Human Genetics, Houston, TX, USA. gira@bcm.edu.
Baylor College of Medicine · USHouston Methodist · USCornell University · USThe University of Texas MD Anderson Cancer Center · US

Funding

Regulation of DNA recombination in Saccharomyces cerevisiaeR01GM080600 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI IRA, GRZEGORZ A · 2007 to 2024
$5.5M
Regulation of Initial Steps of Chromosomal Breaks RepairR01GM125650 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI IRA, GRZEGORZ A · 2018 to 2025
$2.9M
Role of S-nitrosylation in TransdifferentiationR01HL133254 · NHLBI · METHODIST HOSPITAL RESEARCH INSTITUTE · PI CHEN, KAIFU, COOKE, JOHN P · 2018 to 2021
$1.6M
Computational epigenetics modeling of cell identity genesR01GM125632 · NIGMS · METHODIST HOSPITAL RESEARCH INSTITUTE · PI CHEN, KAIFU · 2018 to 2021
$1.4M
NHLBI NIH HHS HL133254NHLBI NIH HHS R01 HL133254NIGMS NIH HHS R01 GM080600NIGMS NIH HHS R01 GM125632NIGMS NIH HHS R01 GM125650
6 · The paper itself

Abstract

Insertions of mobile elements

Indexed as

Chromosome BreakageChromosome DuplicationDNA Breaks, Double-StrandedCentromereDNA End-Joining RepairDNA HelicasesDNA Polymerase betaDNA ReplicationDNA, RibosomalMutagenesis, InsertionalReplication OriginRetroelementsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTelomereDNA2 protein, S cerevisiaeDNA HelicasesDNA Polymerase betaDNA, RibosomalPOL4 protein, S cerevisiaeRetroelementsSaccharomyces cerevisiae Proteins

Identifiers

PMID30518856
PMCPMC6346745
OpenAlexW2903527054

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.