Evidence map›Paper›PMID 30518325›Full record

ArticleBMC genomics2018

Multiple environmental stressors induce complex transcriptomic responses indicative of phenotypic outcomes in Western fence lizard.

Kurt A Gust, Vijender Chaitankar, Preetam Ghosh, Mitchell S Wilbanks, Xianfeng Chen, Natalie D Barker, Don Pham, Leona D Scanlan, Arun Rawat, Larry G Talent and 6 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 11 institutions in 2 countries.

Kurt A GustU.S. Army Engineer Research and Development Center, Environmental Laboratory, Vicksburg, MS, 39180, USA. kurt.a.gust@usace.army.mil.ORCID http://orcid.org/0000-0002-7244-3762
Vijender ChaitankarNational Institute of Health - National Heart, Lung, and Blood Institute, Bethesda, MD, 20892, USA.
Preetam GhoshVirginia Commonwealth University, School of Engineering, Richmond, VA, 23284, USA.
Mitchell S WilbanksU.S. Army Engineer Research and Development Center, Environmental Laboratory, Vicksburg, MS, 39180, USA.
Xianfeng ChenIFXworks LLC, 2915 Columbia Pike, Arlington, VA, 22204, USA.
Natalie D BarkerBennett Aerospace, Cary, NC, 27511, USA.
Don PhamDepartment of Nutritional Sciences and Toxicology, University of California Berkeley, Berkeley, CA, 94720, USA.
Leona D ScanlanDepartment of Nutritional Sciences and Toxicology, University of California Berkeley, Berkeley, CA, 94720, USA.
Arun RawatSidra Medicine, Education City (North Campus), Doha, 26999, Qatar.
Larry G TalentDepartment of Natural Resource Ecology and Management, Oklahoma State University, Stillwater, OK, 74078, USA.
Michael J QuinnU.S. Army Public Health Center, Aberdeen Proving Ground, Aberdeen, MD, 21010, USA.
Christopher D VulpeCollege of Veterinary Medicine, University of Florida, Gainesville, FL, 32610, USA.
Mohamed O ElasriDepartment of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS, 39406-5018, USA.
Mark S JohnsonU.S. Army Public Health Center, Aberdeen Proving Ground, Aberdeen, MD, 21010, USA.
Edward J PerkinsU.S. Army Engineer Research and Development Center, Environmental Laboratory, Vicksburg, MS, 39180, USA.
Craig A McFarlandU.S. Army Public Health Center, Aberdeen Proving Ground, Aberdeen, MD, 21010, USA.
United States Army · USU.S. Army Center for Health Promotion and Preventive Medicine · USBennett Aerospace (United States) · USCalifornia Department of Pesticide Regulation · USNational Heart Lung and Blood Institute · USOklahoma State University · USQatar Airways (Qatar) · QAStructural Analytics (United States) · USUniversity of Florida · USUniversity of Southern Mississippi · USVirginia Commonwealth University · US

Funding

Engineer Research and Development Center Army 6.1, 09-27U.S. Army Army EQI-6.1, 09-27U.S. Army Army EQI-6.2,6.3 BioNetworks
6 · The paper itself

Abstract

backgroundThe health and resilience of species in natural environments is increasingly challenged by complex anthropogenic stressor combinations including climate change, habitat encroachment, and chemical contamination. To better understand impacts of these stressors we examined the individual- and combined-stressor impacts of malaria infection, food limitation, and 2,4,6-trinitrotoluene (TNT) exposures on gene expression in livers of Western fence lizards (WFL, Sceloporus occidentalis) using custom WFL transcriptome-based microarrays.

resultsComputational analysis including annotation enrichment and correlation analysis identified putative functional mechanisms linking transcript expression and toxicological phenotypes. TNT exposure increased transcript expression for genes involved in erythropoiesis, potentially in response to TNT-induced anemia and/or methemoglobinemia and caused dose-specific effects on genes involved in lipid and overall energy metabolism consistent with a hormesis response of growth stimulation at low doses and adverse decreases in lizard growth at high doses. Functional enrichment results were indicative of inhibited potential for lipid mobilization and catabolism in TNT exposures which corresponded with increased inguinal fat weights and was suggestive of a decreased overall energy budget. Malaria infection elicited enriched expression of multiple immune-related functions likely corresponding to increased white blood cell (WBC) counts. Food limitation alone enriched functions related to cellular energy production and decreased expression of immune responses consistent with a decrease in WBC levels.

conclusionsDespite these findings, the lizards demonstrated immune resilience to malaria infection under food limitation with transcriptional results indicating a fully competent immune response to malaria, even under bio-energetic constraints. Interestingly, both TNT and malaria individually increased transcriptional expression of immune-related genes and increased overall WBC concentrations in blood; responses that were retained in the TNT x malaria combined exposure. The results demonstrate complex and sometimes unexpected responses to multiple stressors where the lizards displayed remarkable resiliency to the stressor combinations investigated.

Indexed as

AnimalsBody WeightClimate ChangeCluster AnalysisEcosystemEnergy MetabolismEnvironmental PollutantsErythropoiesisHemolysisLiverLizardsLymphocytesOligonucleotide Array Sequence AnalysisPhenotypePlasmodiumRNAEnvironmental PollutantsRNATrinitrotolueneClimate changeFood limitationGenomicsImmune responseMalariaMultiple stressorsMunitionsReptilesTNT

Identifiers

PMID30518325
PMCPMC6282355
OpenAlexW2903439335

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.