Evidence map›Paper›PMID 30518296›Full record

ArticleRNA biology2019

Length and secondary structure of the 5' non-coding regions of mouse p53 mRNA transcripts - mouse as a model organism for p53 gene expression studies.

Joanna Szpotkowska, Agata Swiatkowska, Jerzy Ciesiołka

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Evaluation of biomarkers in liver followingJournal of diabetes and metabolic disorders · 2020
    Article
  6. Article
  7. Translational Control inInternational journal of molecular sciences · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Joanna Szpotkowskaa Polish Academy of Sciences , Institute of Bioorganic Chemistry , Poznan , Poland.ORCID 0000-0003-4696-158X
Agata Swiatkowskaa Polish Academy of Sciences , Institute of Bioorganic Chemistry , Poznan , Poland.ORCID 0000-0002-3100-2952
Jerzy Ciesiołkaa Polish Academy of Sciences , Institute of Bioorganic Chemistry , Poznan , Poland.ORCID 0000-0001-7274-0751
Institute of Bioorganic Chemistry, Polish Academy of Sciences · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcription initiation sites of Trp53 gene in mice were determined using the 5'RACE method. Based on sequence alignment of the 5'-terminal regions of p53 mRNA in mammals, the site for the most abundant transcript turned out to be essentially identical with that determined for human TP53 gene and slightly differed for the longest transcripts, in mice and humans. Secondary structures of the 5' -terminal regions of the shorter, most abundant and the longest mouse transcripts were determined in vitro and the shorter transcript was also mapped in transfected mouse cells. For the first time, secondary structure models of the 5' terminus of two mouse p53 mRNAs were proposed. Comparing these models with the conservativeness of the nucleotide sequence of the 5'-terminal region of mRNA in mouse and other mammals, the possible function of the selected structural domains of this region was discussed. To elucidate the translation mechanisms, the two studied mRNAs were translated in the presence of an increasing concentration of the cap analog. For the longest transcript, the data suggested that IRES element(s) was/were involved in translation initiation. Additionally, changes in p53 synthesis under genotoxic and endoplasmic reticulum stress conditions in mouse cells were analyzed.

Indexed as

5' Untranslated RegionsGene Expression RegulationNucleic Acid ConformationAnimalsBase SequenceCell LineConserved SequenceInternal Ribosome Entry SitesMicePeptide Chain Initiation, TranslationalResponse ElementsRNA FoldingRNA, MessengerTranscription Initiation SiteTumor Suppressor Protein p535' Untranslated RegionsInternal Ribosome Entry SitesRNA, MessengerTumor Suppressor Protein p535′ non-coding region5ʹRACE5ʹUTRMouse p53 mRNARNA secondary structure

Identifiers

PMID30518296
PMCPMC6380314
OpenAlexW2904642071

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.