Evidence map›Paper›PMID 30517636›Full record

ArticleGenome biology and evolution2019

The Transcriptomic Landscape of Yaks Reveals Molecular Pathways for High Altitude Adaptation.

Xuebin Qi, Qu Zhang, Yaoxi He, Lixin Yang, Xiaoming Zhang, Peng Shi, Linping Yang, Zhengheng Liu, Fuheng Zhang, Fengyun Liu and 10 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 90 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. A comprehensive full-length transcriptome atlas across multiple organs of an Indian yak breed-Arunachali.Mammalian genome : official journal of the International Mammalian Genome Society · 2026
    Article
  6. Genome-wide association study of mature cow size traits in American Angus cattle.Mammalian genome : official journal of the International Mammalian Genome Society · 2026
    Article
  7. Article
  8. A Multi-Tissue Yak (Animals : an open access journal from MDPI · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Exploring the genetic footprints of high altitude adapted humans and livestock.Mammalian genome : official journal of the International Mammalian Genome Society · 2025
    Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Integrative transcriptomic analysis reveals alternative splicing complexity and transcriptomic diversity in porcine placentas across altitudes.DNA research : an international journal for rapid publication of reports on genes and genomes · 2025
    Article

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 1 country.

Xuebin QiState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Qu ZhangState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Yaoxi HeState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Lixin YangState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Xiaoming ZhangState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Peng ShiState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Linping YangAnimal Husbandry, Veterinary and Forestry Bureau of Maqu County, Maqu, China.
Zhengheng LiuAnimal Husbandry, Veterinary and Forestry Bureau of Maqu County, Maqu, China.
Fuheng ZhangAnimal Husbandry, Veterinary and Forestry Bureau of Maqu County, Maqu, China.
Fengyun LiuNational Key Laboratory of High Altitude Medicine, High Altitude Medical Research Institute, Xining, China.
Shiming LiuNational Key Laboratory of High Altitude Medicine, High Altitude Medical Research Institute, Xining, China.
Tianyi WuNational Key Laboratory of High Altitude Medicine, High Altitude Medical Research Institute, Xining, China.
Chaoying CuiHigh Altitude Medical Research Center, School of Medicine, Tibetan University, Lhasa, China.
OuzhuluobuHigh Altitude Medical Research Center, School of Medicine, Tibetan University, Lhasa, China.
Caijuan BaiHigh Altitude Medical Research Center, School of Medicine, Tibetan University, Lhasa, China.
BaimakangzhuoHigh Altitude Medical Research Center, School of Medicine, Tibetan University, Lhasa, China.
Jianlin HanCAAS-ILRI Joint Laboratory on Livestock and Forage Genetic Resources, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences (CAAS), Beijing, China.
Shengguo ZhaoCollege of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Chunnian LiangLanzhou Animal Husbandry and Veterinary Drug Institute, Chinese Academy of Agricultural Sciences, Lanzhou, China.
Bing SuState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Chinese Academy of Sciences · CNTibetan Traditional Medical College · CNKunming Institute of Zoology · CNShandong Province Animal Husbandry and Veterinary Bureau · CNGansu Agricultural University · CNInstitute of Animal Sciences · CNLanzhou Institute of Husbandry and Pharmaceutical Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Yak is one of the largest native mammalian species at the Himalayas, the highest plateau area in the world with an average elevation of >4,000 m above the sea level. Yak is well adapted to high altitude environment with a set of physiological features for a more efficient blood flow for oxygen delivery under hypobaric hypoxia. Yet, the genetic mechanism underlying its adaptation remains elusive. We conducted a cross-tissue, cross-altitude, and cross-species study to characterize the transcriptomic landscape of domestic yaks. The generated multi-tissue transcriptomic data greatly improved the current yak genome annotation by identifying tens of thousands novel transcripts. We found that among the eight tested tissues (lung, heart, kidney, liver, spleen, muscle, testis, and brain), lung and heart are two key organs showing adaptive transcriptional changes and >90% of the cross-altitude differentially expressed genes in lung display a nonlinear regulation. Pathways related to cell survival and proliferation are enriched, including PI3K-Akt, HIF-1, focal adhesion, and ECM-receptor interaction. These findings, in combination with the comprehensive transcriptome data set, are valuable to understanding the genetic mechanism of hypoxic adaptation in yak.

Indexed as

Adaptation, BiologicalAltitudeTranscriptomeAnimalsCattleGene ExpressionHypoxiaLungMaleMolecular Sequence AnnotationMyocardiumSignal Transduction

Identifiers

PMID30517636
PMCPMC6320679
OpenAlexW2902468632

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LicenceCC BY-NC
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.