Evidence map›Paper›PMID 30515693›Full record

ArticleMolecular biology reports2019

PKNOX2 expression and regulation in the bone marrow mesenchymal stem cells of Fanconi anemia patients and healthy donors.

Ilgin Cagnan, Erdal Cosgun, Ozlen Konu, Duygu Uckan, Aysen Gunel-Ozcan

Abstract read
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In one paragraph

Article in Molecular biology reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 3 countries.

Ilgin CagnanDepartment of Stem Cell Sciences, Graduate School of Health Sciences, Center for Stem Cell Research and Development, Hacettepe University, Sihhiye, 06100, Ankara, Turkey.ORCID http://orcid.org/0000-0003-1255-2788
Erdal CosgunDepartment of Biostatistics, Faculty of Medicine, Hacettepe University, Ankara, Turkey.ORCID http://orcid.org/0000-0002-1068-6523
Ozlen KonuDepartment of Molecular Biology and Genetics, Bilkent University, Ankara, Turkey.
Duygu UckanDepartment of Stem Cell Sciences, Graduate School of Health Sciences, Center for Stem Cell Research and Development, Hacettepe University, Sihhiye, 06100, Ankara, Turkey.
Aysen Gunel-OzcanDepartment of Stem Cell Sciences, Graduate School of Health Sciences, Center for Stem Cell Research and Development, Hacettepe University, Sihhiye, 06100, Ankara, Turkey. agozcan@hacettepe.edu.tr.
Hacettepe University · TRBilkent University · TRCentral Bank of Cyprus · CYMicrosoft (United States) · US

Funding

Türkiye Bilimsel ve Teknolojik Araştirma Kurumu 110S021Türkiye Bilimsel ve Teknolojik Araştirma Kurumu 214Z033
6 · The paper itself

Abstract

HOX and TALE transcription factors are important regulators of development and homeostasis in determining cellular identity. Deregulation of this process may drive cancer progression. The aim of this study was to investigate the expression of these transcription factors in the bone marrow derived mesenchymal stem cells (BM-MSCs) of Fanconi anemia (FA) patients, which is a cancer-predisposing disease. Expression levels of HOX and TALE genes in BM-MSCs were obtained from FA patients and healthy donors by RT-qPCR and highly conserved expression levels were observed between patient and donor cells, except PKNOX2, which is a member of TALE class. PKNOX2 was significantly downregulated in FA cells compared to donors (P < 0.05). PKNOX2 expression levels did not change with diepoxybutane (DEB), a DNA crosslinking agent, in either donor or FA cells except one patient's with a truncation mutation of FANCA. A difference of PKNOX2 protein level was not obtained between FA patient and donor BM-MSCs by western blot analysis. When human TGF-β1 (rTGF-β1) recombinant protein was provided to the cultures, PKNOX2 as well as TGF-β1 expression increased both in FA and donor BM-MSCs in a dose dependent manner. 5 ng/mL rTGF-β stimulation had more dominant effect on the gene expression of donor BM-MSCs compared to FA cells. Decreased PKNOX2 expression in FA BM-MSCs may provide new insights into the molecular pathophysiology of the disease and TGF-β1 levels of the microenvironment may be the cause of PKNOX2 downregulation.

Indexed as

Gene Expression RegulationTissue DonorsBone Marrow CellsFanconi AnemiaHomeodomain ProteinsHumansMesenchymal Stem CellsRecombinant ProteinsTranscription FactorsTransforming Growth Factor beta1Homeodomain ProteinsPKNOX2 protein, humanRecombinant ProteinsTranscription FactorsTransforming Growth Factor beta1Bone marrow mesenchymal stem cellsFanconi anemiaHOX genesPKNOX2TALE classTGF-β1

Identifiers

PMID30515693
OpenAlexW2902643714

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.