Evidence map›Paper›PMID 30514850›Full record

ArticleScientific reports2018

Computational affinity maturation of camelid single-domain intrabodies against the nonamyloid component of alpha-synuclein.

Sai Pooja Mahajan, Bunyarit Meksiriporn, Dujduan Waraho-Zhmayev, Kevin B Weyant, Ilkay Kocer, David C Butler, Anne Messer, Fernando A Escobedo, Matthew P DeLisa

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 46 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Single-Domain Antibody-Based Protein Degrader for Synucleinopathies.bioRxiv : the preprint server for biology · 2024
    Article
  8. Article
  9. Article
  10. Evolution of nanobodies specific for BCL11A.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. VInternational journal of molecular sciences · 2022
    Review
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Sai Pooja MahajanRobert F. Smith School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY, 14853, USA.
Bunyarit MeksiripornNancy E. and Peter C. Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, 14853, USA.
Dujduan Waraho-ZhmayevBiological Engineering Program, Faculty of Engineering, King Mongkut's University of Technology Thonburi, Bangkok, Thailand.
Kevin B WeyantRobert F. Smith School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY, 14853, USA.
Ilkay KocerRobert F. Smith School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY, 14853, USA.
David C ButlerNeural Stem Cell Institute, Rensselaer, NY, 12144, USA.
Anne MesserNeural Stem Cell Institute, Rensselaer, NY, 12144, USA.
Fernando A EscobedoRobert F. Smith School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY, 14853, USA. fe13@cornell.edu.
Matthew P DeLisaRobert F. Smith School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY, 14853, USA. md255@cornell.edu.ORCID http://orcid.org/0000-0003-3226-1566
Cornell University · USUniversity at Albany, State University of New York · USKing Mongkut's University of Technology Thonburi · TH

Funding

Intrabody Therapy of Parkinson's DiseaseR21NS043699 · NINDS · WADSWORTH CENTER · PI MESSER, ANNE · 2002 to 2003
$295k
NINDS NIH HHS R21 NS043699
6 · The paper itself

Abstract

Improving the affinity of protein-protein interactions is a challenging problem that is particularly important in the development of antibodies for diagnostic and clinical use. Here, we used structure-based computational methods to optimize the binding affinity of V

Indexed as

Antibody AffinityMolecular Docking Simulationalpha-SynucleinAnimalsAntibodiesCamelidaeHumansProtein BindingSingle-Chain Antibodiesalpha-SynucleinAntibodiesSingle-Chain Antibodies

Identifiers

PMID30514850
PMCPMC6279780
OpenAlexW2902756775

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.