Evidence map›Paper›PMID 30514846›Full record

ArticleNature communications2018

Molecular mechanism of a covalent allosteric inhibitor of SUMO E1 activating enzyme.

Zongyang Lv, Lingmin Yuan, James H Atkison, Katelyn M Williams, Ramir Vega, E Hampton Sessions, Daniela B Divlianska, Christopher Davies, Yuan Chen, Shaun K Olsen

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 70 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Immune regulation by the SUMO family.Nature reviews. Immunology · 2025
    Review
  11. The impact of dysregulation SUMOylation on prostate cancer.Journal of translational medicine · 2025
    Review
  12. SUMO Antibody Validation.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  13. Review
  14. Review
  15. Review
  16. Article
  17. Review
  18. Review
  19. Article
  20. The SUMOylation and ubiquitination crosstalk in cancer.Journal of cancer research and clinical oncology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Zongyang LvDepartment of Biochemistry & Molecular Biology and Hollings Cancer Center, Medical University of South Carolina, Charleston, 29425, SC, USA.
Lingmin YuanDepartment of Biochemistry & Molecular Biology and Hollings Cancer Center, Medical University of South Carolina, Charleston, 29425, SC, USA.
James H AtkisonDepartment of Biochemistry & Molecular Biology and Hollings Cancer Center, Medical University of South Carolina, Charleston, 29425, SC, USA.
Katelyn M WilliamsDepartment of Biochemistry & Molecular Biology and Hollings Cancer Center, Medical University of South Carolina, Charleston, 29425, SC, USA.
Ramir VegaDepartment of Molecular Medicine, Beckman Research Institute of City of Hope, Duarte, 91010, CA, USA.
E Hampton SessionsConrad Prebys Center for Chemical Genomics, Sanford Burnham Prebys Medical Discovery Institute at Lake Nona, Orlando, 32827, FL, USA.
Daniela B DivlianskaConrad Prebys Center for Chemical Genomics, Sanford Burnham Prebys Medical Discovery Institute at Lake Nona, Orlando, 32827, FL, USA.
Christopher DaviesDepartment of Biochemistry & Molecular Biology and Hollings Cancer Center, Medical University of South Carolina, Charleston, 29425, SC, USA.
Yuan ChenDepartment of Molecular Medicine, Beckman Research Institute of City of Hope, Duarte, 91010, CA, USA. ychen@coh.org.
Shaun K OlsenDepartment of Biochemistry & Molecular Biology and Hollings Cancer Center, Medical University of South Carolina, Charleston, 29425, SC, USA. olsensk@musc.edu.ORCID http://orcid.org/0000-0002-1265-7101
Medical University of South Carolina · USSanford Burnham Prebys Medical Discovery Institute · USCity of Hope · USCity Of Hope National Medical Center · US

Funding

Sanford-Burnham Center for Chemical GenomicsU54HG005033 · NHGRI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI JACKSON, MICHAEL · 2008 to 2012
$72.5M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
SUMO modification and DNA damage response in cancer therapyR01GM086171 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHEN, YUAN · 2008 to 2020
$5.2M
Integrative Training in Oncogenic SignalingT32CA193201 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI HOWE, PHILIP H, LONG, DAVID THOMAS · 2016 to 2025
$3.7M
Targeting c-Myc and Proteasome Inhibitor Resistance in Multiple MyelomaR01CA212119 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHEN, YUAN · 2017 to 2021
$2.8M
Structural Biology of the Ubiquitin Conjugation SystemR01GM115568 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI OLSEN, SHAUN · 2015 to 2023
$2.7M
SUMO Modification and Cancer TherapyR01CA265410 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHEN, YUAN · 2021 to 2025
$2.5M
Structure and Function of the Essential Cell Cycle Regulator Cdc34R01GM128731 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Shaun Olsen · 2019 to 2026
$2.5M
K-Ras sumoylation in cell proliferation and transformationR01CA216987 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CHEN, YUAN, DAI, WEI · 2017 to 2021
$2.5M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
SENP:Conformational Dynamics and Inhibition by Small MoleculesR01GM102538 · NIGMS · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI CHEN, YUAN · 2012 to 2015
$1.7M
Investigation of Cdc34 Molecular Recognition by its Enzyme Partners, Uba1 and SCF Ligases.F30CA216921 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI WILLIAMS, KATELYN · 2017 to 2020
$187k
NCI NIH HHS F30 CA216921NCI NIH HHS R01 CA212119NCI NIH HHS R01 CA216987NCI NIH HHS R01 CA265410NCI NIH HHS T32 CA193201NCRR NIH HHS S10 RR027139NCRR NIH HHS S10 RR029205NHGRI NIH HHS U54 HG005033NIDA NIH HHS R03 DA026556NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01 GM086171NIGMS NIH HHS R01 GM102538NIGMS NIH HHS R01 GM115568NIGMS NIH HHS R01 GM128731
6 · The paper itself

Abstract

E1 enzymes activate ubiquitin (Ub) and ubiquitin-like modifiers (Ubls) in the first step of Ub/Ubl conjugation cascades and represent potential targets for therapeutic intervention in cancer and other life-threatening diseases. Here, we report the crystal structure of the E1 enzyme for the Ubl SUMO in complex with a recently discovered and highly specific covalent allosteric inhibitor (COH000). The structure reveals that COH000 targets a cryptic pocket distinct from the active site that is completely buried in all previous SUMO E1 structures and that COH000 binding to SUMO E1 is accompanied by a network of structural changes that altogether lock the enzyme in a previously unobserved inactive conformation. These structural changes include disassembly of the active site and a 180° rotation of the catalytic cysteine-containing SCCH domain, relative to conformational snapshots of SUMO E1 poised to catalyze adenylation. Altogether, our study provides a molecular basis for the inhibitory mechanism of COH000 and its SUMO E1 specificity, and also establishes a framework for potential development of molecules targeting E1 enzymes for other Ubls at a cryptic allosteric site.

Indexed as

Allosteric RegulationCatalytic DomainCrystallography, X-RayEnzyme ActivationEnzyme InhibitorsHumansModels, MolecularProtein ConformationProtein Interaction Domains and MotifsUbiquitinUbiquitin-Activating EnzymesEnzyme InhibitorsSAE1 protein, humanUBA2 protein, humanUbiquitinUbiquitin-Activating Enzymes

Identifiers

PMID30514846
PMCPMC6279746
OpenAlexW2903446536

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.