Evidence map›Paper›PMID 30514821›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Seneca Valley virus attachment and uncoating mediated by its receptor anthrax toxin receptor 1.

Lin Cao, Ran Zhang, Tingting Liu, Zixian Sun, Mingxu Hu, Yuna Sun, Lingpeng Cheng, Yu Guo, Sheng Fu, Junjie Hu and 10 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 2 institutions in 1 country.

Lin CaoDrug Discovery Center for Infectious Disease, College of Pharmacy, Nankai University, 300071 Tianjin, China.
Ran ZhangSchool of Life Sciences, Tsinghua University, 100084 Beijing, China.
Tingting LiuState Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, 430070 Hubei, China.
Zixian SunSchool of Life Sciences, Tsinghua University, 100084 Beijing, China.
Mingxu HuSchool of Life Sciences, Tsinghua University, 100084 Beijing, China.
Yuna SunNational Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Science, 100101 Beijing, China.
Lingpeng ChengSchool of Life Sciences, Tsinghua University, 100084 Beijing, China.ORCID 0000-0002-9148-0550
Yu GuoDrug Discovery Center for Infectious Disease, College of Pharmacy, Nankai University, 300071 Tianjin, China.
Sheng FuMinistry of Education Key Laboratory of Protein Science, School of Medicine, Tsinghua University, 100084 Beijing, China.
Junjie HuHubei Colorectal Cancer Clinical Research Center, Hubei Cancer Hospital, 430071 Wuhan, China.
Xiangmin LiState Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, 430070 Hubei, China.
Chengqi YuTsinghua University Affiliated High School, 100084 Beijing, China.
Hanyang WangNanjing Foreign Language School, 210046 Nanjing, China.
Huanchun ChenState Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, 430070 Hubei, China.
Xueming LiSchool of Life Sciences, Tsinghua University, 100084 Beijing, China.
Elizabeth E FryDivision of Structural Biology, University of Oxford, Headington, OX3 7BN Oxford, United Kingdom.
David I StuartDivision of Structural Biology, University of Oxford, Headington, OX3 7BN Oxford, United Kingdom dave@strubi.ox.ac.uk qianp@mail.hzau.edu.cn louzy@mail.tsinghua.edu.cn.
Ping QianState Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, 430070 Hubei, China; dave@strubi.ox.ac.uk qianp@mail.hzau.edu.cn louzy@mail.tsinghua.edu.cn.
Zhiyong LouMinistry of Education Key Laboratory of Protein Science, School of Medicine, Tsinghua University, 100084 Beijing, China; dave@strubi.ox.ac.uk qianp@mail.hzau.edu.cn louzy@mail.tsinghua.edu.cn.ORCID 0000-0003-2728-881X
Zihe RaoDrug Discovery Center for Infectious Disease, College of Pharmacy, Nankai University, 300071 Tianjin, China.
Nankai University · CNTsinghua University · CN

Funding

Medical Research Council MR/N00065X/1
6 · The paper itself

Abstract

Seneca Valley virus (SVV) is an oncolytic picornavirus with selective tropism for neuroendocrine cancers. SVV mediates cell entry by attachment to the receptor anthrax toxin receptor 1 (ANTXR1). Here we determine atomic structures of mature SVV particles alone and in complex with ANTXR1 in both neutral and acidic conditions, as well as empty "spent" particles in complex with ANTXR1 in acidic conditions by cryoelectron microscopy. SVV engages ANTXR1 mainly by the VP2 DF and VP1 CD loops, leading to structural changes in the VP1 GH loop and VP3 GH loop, which attenuate interprotomer interactions and destabilize the capsid assembly. Despite lying on the edge of the attachment site, VP2 D146 interacts with the metal ion in ANTXR1 and is required for cell entry. Though the individual substitution of most interacting residues abolishes receptor binding and virus propagation, a serine-to-alanine mutation at VP2 S177 significantly increases SVV proliferation. Acidification of the SVV-ANTXR1 complex results in a major reconfiguration of the pentameric capsid assemblies, which rotate ∼20° around the icosahedral fivefold axes to form a previously uncharacterized spent particle resembling a potential uncoating intermediate with remarkable perforations at both two- and threefold axes. These structures provide high-resolution snapshots of SVV entry, highlighting opportunities for anticancer therapeutic optimization.

Indexed as

Capsid ProteinsCryoelectron MicroscopyCrystallography, X-RayHumansMicrofilament ProteinsModels, MolecularNeoplasm ProteinsPicornaviridaeProtein BindingProtein ConformationReceptors, Cell SurfaceVirus UncoatingANTXR1 protein, humanCapsid ProteinsMicrofilament ProteinsNeoplasm ProteinsReceptors, Cell SurfaceANTXR1cryo-EMentryreceptor recognitionSeneca Valley virus

Identifiers

PMID30514821
PMCPMC6304951
OpenAlexW2903413702

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.