Evidence map›Paper›PMID 30514790›Full record

ArticleCold Spring Harbor molecular case studies2019

Clinical outcomes after whole-genome sequencing in patients with metastatic non-small-cell lung cancer.

Erica S Tsang, Yaoqing Shen, Negar Chooback, Cheryl Ho, Martin Jones, Daniel J Renouf, Howard Lim, Sophie Sun, Stephen Yip, Erin Pleasance and 10 more

Open access · diamondAbstract read
In one paragraph

Article in Cold Spring Harbor molecular case studies, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Complete Chloroplast Genome Sequence of an Engelmann Spruce (Microbiology resource announcements · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 3 institutions in 1 country.

Erica S TsangDivision of Medical Oncology, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Yaoqing ShenCanada's Michael Smith Genome Sciences Center, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Negar ChoobackDivision of Medical Oncology, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Cheryl HoDivision of Medical Oncology, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Martin JonesCanada's Michael Smith Genome Sciences Center, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Daniel J RenoufDivision of Medical Oncology, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Howard LimDivision of Medical Oncology, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Sophie SunDivision of Medical Oncology, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Stephen YipDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada.
Erin PleasanceCanada's Michael Smith Genome Sciences Center, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Diana N IonescuDepartment of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada.
Karen MungallCanada's Michael Smith Genome Sciences Center, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Katayoon KasaianCanada's Michael Smith Genome Sciences Center, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Yussanne MaCanada's Michael Smith Genome Sciences Center, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Yongjun ZhaoCanada's Michael Smith Genome Sciences Center, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Andrew MungallCanada's Michael Smith Genome Sciences Center, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Richard MooreCanada's Michael Smith Genome Sciences Center, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Steven J M JonesCanada's Michael Smith Genome Sciences Center, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Marco MarraCanada's Michael Smith Genome Sciences Center, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Janessa LaskinCanada's Michael Smith Genome Sciences Center, BC Cancer, Vancouver, British Columbia V5Z 4E6, Canada.
Canada's Michael Smith Genome Sciences Centre · CABC Cancer Agency · CAUniversity of British Columbia · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Personalized Onco-Genomics (POG) program at BC Cancer integrates whole-genome (DNA) and RNA sequencing into practice for metastatic malignancies. We examined the subgroup of patients with metastatic non-small-cell lung cancer (NSCLC) and report the prevalence of actionable targets, treatments, and outcomes. We identified patients who were enrolled in the POG program between 2012 and 2016 who had a tumor biopsy and blood samples with comprehensive DNA (80×, 40× normal) and RNA sequencing followed by in-depth bioinformatics to identify potential cancer drivers and actionable targets. In NSCLC cases, we compared the progression-free survival (PFS) of "POG-informed therapies" with the PFS of the last regimen prior to POG (PFS ratio). In 29 NSCLC cases, 11 were male (38%), the median age was 60.2 yr (range: 39.4-72.6), and histologies included were adenocarcinoma (93%) and squamous cell carcinoma (7%). Potential molecular targets (i.e., cancer drivers including

Indexed as

MutationAdenocarcinomaAgedCarcinoma, Non-Small-Cell LungCarcinoma, Squamous CellFemaleHumansLung NeoplasmsMaleMiddle AgedProgression-Free SurvivalWhole Genome Sequencinglung adenocarcinoma

Identifiers

PMID30514790
PMCPMC6371742
OpenAlexW2902322423

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.