Evidence map›Paper›PMID 30514634›Full record

ArticleBiophysical journal2018

TEFM Enhances Transcription Elongation by Modifying mtRNAP Pausing Dynamics.

Hongwu Yu, Cheng Xue, Mengping Long, Huiqiang Jia, Guosheng Xue, Shengwang Du, Yves Coello, Toyotaka Ishibashi

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

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  8. High expression of theJournal of gastrointestinal oncology · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Hongwu YuDivision of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, NT, Hong Kong, HKSAR, China.
Cheng XueDivision of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, NT, Hong Kong, HKSAR, China.
Mengping LongDivision of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, NT, Hong Kong, HKSAR, China.
Huiqiang JiaDivision of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, NT, Hong Kong, HKSAR, China.
Guosheng XueDivision of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, NT, Hong Kong, HKSAR, China; Department of Physics, Hong Kong University of Science and Technology, Clear Water Bay, NT, Hong Kong, HKSAR, China.
Shengwang DuDepartment of Physics, Hong Kong University of Science and Technology, Clear Water Bay, NT, Hong Kong, HKSAR, China; Department of Chemical and Biological Engineering, Hong Kong University of Science and Technology, Clear Water Bay, NT, Hong Kong, HKSAR, China.
Yves CoelloDepartamento de Ciencias, Sección Química, Pontificia Universidad Católica del Perú PUCP, Lima, Peru.
Toyotaka IshibashiDivision of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, NT, Hong Kong, HKSAR, China. Electronic address: toyotaka@ust.hk.
Hong Kong University of Science and Technology · HKPontificia Universidad Católica del Perú · PE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Regulation of transcription elongation is one of the key mechanisms employed to control gene expression. The single-subunit mitochondrial RNA polymerase (mtRNAP) transcribes mitochondrial genes, such as those related to ATP synthesis. We investigated how mitochondrial transcription elongation factor (TEFM) enhances mtRNAP transcription elongation using a single-molecule optical-tweezers transcription assay, which follows transcription dynamics in real time and allows the separation of pause-free elongation from transcriptional pauses. We found that TEFM enhances the stall force of mtRNAP. Although TEFM does not change the pause-free elongation rate, it enhances mtRNAP transcription elongation by reducing the frequency of long-lived pauses and shortening their durations. Furthermore, we demonstrate how mtRNAP passes through the conserved sequence block II, which is the key sequence for the switch between DNA replication and transcription in mitochondria. Our findings elucidate how both TEFM and mitochondrial genomic DNA sequences directly control the transcription elongation dynamics of mtRNAP.

Indexed as

Transcription, GeneticBiomechanical PhenomenaDNA-Directed RNA PolymerasesG-QuadruplexesHumansMitochondriaNucleotide MotifsTranscription FactorsTranscription Termination, GeneticDNA-Directed RNA PolymerasesTranscription Factors

Identifiers

PMID30514634
PMCPMC6302244
OpenAlexW2899660717

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.