ArticleBMC plant biology2018
An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus.
Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed, 40 citations in OpenAlex.
- Genome-Wide Identification of theInternational journal of molecular sciences · 2026Article
- Transcriptome profiling of a novelApplied and environmental microbiology · 2026Article
- QTL Mapping and Candidate Gene Screening for Enhancing Oil Content in Silage Maize.Plants (Basel, Switzerland) · 2025Article
- Bioinformatics Identification and Expression Analysis of Acetyl-CoA Carboxylase Reveal Its Role in Isoflavone Accumulation during Soybean Seed Development.International journal of molecular sciences · 2024Article
- Lipid Metabolism and Improvement in Oilseed Crops: Recent Advances in Multi-Omics Studies.Metabolites · 2023Review
- Oil candidate genes in seeds of cotton (Gossypium hirsutum L.) and functional validation of GhPXN1.Biotechnology for biofuels and bioproducts · 2023Article
- Caleosin/peroxygenases: multifunctional proteins in plants.Annals of botany · 2023Review
- 4D genetic networks reveal the genetic basis of metabolites and seed oil-related traits in 398 soybean RILs.Biotechnology for biofuels and bioproducts · 2022Article
- Transcriptomic Profile Analysis ofGenes · 2022Article
- An integrated omics analysis reveals the gene expression profiles of maize, castor bean, and rapeseed for seed oil biosynthesis.BMC plant biology · 2022Article
- Whole genome re-sequencing reveals the genetic diversity and evolutionary patterns of Eucommia ulmoides.Molecular genetics and genomics : MGG · 2022Article
- Identification and analysis of oil candidate genes reveals the molecular basis of cottonseed oil accumulation in Gossypium hirsutum L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- A Multi-Level Iterative Bi-Clustering Method for Discovering miRNA Co-regulation Network of Abiotic Stress Tolerance in Soybeans.Frontiers in plant science · 2022Article
- Genome-wide identification and expression analysis of Raffinose synthetase family in cotton.BMC bioinformatics · 2021Article
- Genetic diversity and evolutionary patterns ofEcology and evolution · 2021Article
- Full-Length Transcriptome Analysis Reveals Candidate Genes Involved in Terpenoid Biosynthesis inFrontiers in genetics · 2021Article
- Integrated Bioinformatics Analyses ofFrontiers in plant science · 2021Article
- Integrated Transcriptomic and Bioinformatics Analyses Reveal the Molecular Mechanisms for the Differences in Seed Oil and Starch Content BetweenFrontiers in plant science · 2021Article
- Salt-responsive transcriptome analysis of triticale reveals candidate genes involved in the key metabolic pathway in response to salt stress.Scientific reports · 2020Article
- Drought-responsive genes, late embryogenesis abundant group3 (LEA3) and vicinal oxygen chelate, function in lipid accumulation in Brassica napus and Arabidopsis mainly via enhancing photosynthetic efficiency and reducing ROS.Plant biotechnology journal · 2019Article
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Authors and funding
3 authors at 2 institutions in 2 countries.
Funding
Abstract
backgroundRapeseed (Brassica napus L.) and soybean (Glycine max L.) seeds are rich in both protein and oil, which are major sources of biofuels and nutrition. Although the difference in seed oil content between soybean (~ 20%) and rapeseed (~ 40%) exists, little is known about its underlying molecular mechanism.
resultsAn integrated omics analysis was performed in soybean, rapeseed, Arabidopsis (Arabidopsis thaliana L. Heynh), and sesame (Sesamum indicum L.), based on Arabidopsis acyl-lipid metabolism- and carbon metabolism-related genes. As a result, candidate genes and their transcription factors and microRNAs, along with phylogenetic analysis and co-expression network analysis of the PEPC gene family, were found to be largely associated with the difference between the two species. First, three soybean genes (Glyma.13G148600, Glyma.13G207900 and Glyma.12G122900) co-expressed with GmPEPC1 are specifically enriched during seed storage protein accumulation stages, while the expression of BnPEPC1 is putatively inhibited by bna-miR169, and two genes BnSTKA and BnCKII are co-expressed with BnPEPC1 and are specifically associated with plant circadian rhythm, which are related to seed oil biosynthesis. Then, in de novo fatty acid synthesis there are rapeseed-specific genes encoding subunits β-CT (BnaC05g37990D) and BCCP1 (BnaA03g06000D) of heterogeneous ACCase, which could interfere with synthesis rate, and β-CT is positively regulated by four transcription factors (BnaA01g37250D, BnaA02g26190D, BnaC01g01040D and BnaC07g21470D). In triglyceride synthesis, GmLPAAT2 is putatively inhibited by three miRNAs (gma-miR171, gma-miR1516 and gma-miR5775). Finally, in rapeseed there was evidence for the expansion of gene families, CALO, OBO and STERO, related to lipid storage, and the contraction of gene families, LOX, LAH and HSI2, related to oil degradation.
conclusionsThe molecular mechanisms associated with differences in seed oil content provide the basis for future breeding efforts to improve seed oil content.
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