Evidence map›Paper›PMID 30511671›Full record

ArticleActa crystallographica. Section F, Structural biology communications2018

Structures of endo-1,5-α-L-arabinanase mutants from Bacillus thermodenitrificans TS-3 in complex with arabino-oligosaccharides.

Asako Yamaguchi, Yuri Sogabe, Satomi Fukuoka, Takuo Sakai, Toshiji Tada

Open access · greenAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 86% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Asako YamaguchiGraduate School of Science, Osaka Prefecture University, Sakai, Osaka 599-8531, Japan.
Yuri SogabeGraduate School of Science, Osaka Prefecture University, Sakai, Osaka 599-8531, Japan.
Satomi FukuokaGraduate School of Science, Osaka Prefecture University, Sakai, Osaka 599-8531, Japan.
Takuo SakaiIGA Bio Research, Sakai, Osaka 590-0004, Japan.
Toshiji TadaGraduate School of Science, Osaka Prefecture University, Sakai, Osaka 599-8531, Japan.ORCID 0000-0002-5399-2571
Osaka Prefecture University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The thermostable endo-1,5-α-L-arabinanase from Bacillus thermodenitrificans TS-3 (ABN-TS) hydrolyzes the α-1,5-L-arabinofuranoside linkages of arabinan. In this study, the crystal structures of inactive ABN-TS mutants, D27A and D147N, were determined in complex with arabino-oligosaccharides. The crystal structures revealed that ABN-TS has at least six subsites in the deep V-shaped cleft formed across one face of the propeller structure. The structural features indicate that substrate recognition is profoundly influenced by the remote subsites as well as by the subsites surrounding the active center. The `open' structure of the substrate-binding cleft of the endo-acting ABN-TS is suitable for the random binding of several sugar units in polymeric substrates.

Indexed as

MutationAmino Acid SequenceBacillusCrystallizationCrystallography, X-RayGlycoside HydrolasesOligosaccharidesPolysaccharidesProtein Structure, SecondaryProtein Structure, Tertiaryarabanarabinan endo-1,5-alpha-L-arabinosidaseGlycoside HydrolasesOligosaccharidesPolysaccharidesarabinanasesBacillus thermodenitrificansbiofuelscrystal structureendo-1,5-α-l-arabinanase mutantsendo-acting enzymesenzyme–substrate complexglycoside hydrolase family 43

Identifiers

PMID30511671
PMCPMC6277961
OpenAlexW2902286791

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.