Evidence map›Paper›PMID 30510545›Full record

ArticleFrontiers in microbiology2018

High-Throughput Sequencing Facilitates Characterization of a "Forgotten" Plant Virus: The Case of a Henbane Mosaic Virus Infecting Tomato.

Anja Pecman, Denis Kutnjak, Nataša Mehle, Magda Tušek Žnidarič, Ion Gutiérrez-Aguirre, Patricija Pirnat, Ian Adams, Neil Boonham, Maja Ravnikar

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Plant Viruses InfectingPlants (Basel, Switzerland) · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Anja PecmanDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Denis KutnjakDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Nataša MehleDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Magda Tušek ŽnidaričDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Ion Gutiérrez-AguirreDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Patricija PirnatKZ Agraria Koper z.o.o., Koper, Slovenia.
Ian AdamsFera Science Ltd., York, United Kingdom.
Neil BoonhamInstitute for Agri-Food Research and Innovation, Newcastle University, Newcastle upon Tyne, United Kingdom.
Maja RavnikarDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
National Institute of Biology · SIFera Science (United Kingdom) · GBJožef Stefan International Postgraduate School · SINewcastle University · GBUniversity of Nova Gorica · SI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High-throughput sequencing has dramatically broadened the possibilities for plant virus research and diagnostics, enabling discovery of new or obscure viruses, and virus strains and rapid sequencing of their genomes. In this research, we employed high-throughput sequencing to discover a new virus infecting tomato,

Indexed as

henbane mosaic virushigh-throughput sequencinghost range analysisphylogenypotyvirustomato

Identifiers

PMID30510545
PMCPMC6254090
OpenAlexW2901510819

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.