Evidence map›Paper›PMID 30510233›Full record

ArticleNature communications2018

High-throughput brain activity mapping and machine learning as a foundation for systems neuropharmacology.

Xudong Lin, Xin Duan, Claire Jacobs, Jeremy Ullmann, Chung-Yuen Chan, Siya Chen, Shuk-Han Cheng, Wen-Ning Zhao, Annapurna Poduri, Xin Wang and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

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  13. Fish Capsules: A System for High-Throughput Screening of Combinatorial Drugs.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Xudong LinDepartment of Biomedical Engineering, City University of Hong Kong, 999077, Kowloon, Hong Kong SAR, China.
Xin DuanDepartment of Biomedical Science, City University of Hong Kong, 999077, Kowloon, Hong Kong SAR, China.
Claire JacobsChemical Neurobiology Laboratory, Center for Genomic Medicine, Massachusetts General Hospital, Department of Neurology, Harvard Medical School, Boston, MA, 02114, USA.
Jeremy UllmannEpilepsy Genetics Program and F.M. Kirby Neurobiology Center, Boston Children's Hospital, Department of Neurology, Harvard Medical School, Boston, MA, 02115, USA.
Chung-Yuen ChanDepartment of Biomedical Engineering, City University of Hong Kong, 999077, Kowloon, Hong Kong SAR, China.
Siya ChenDepartment of Biomedical Engineering, City University of Hong Kong, 999077, Kowloon, Hong Kong SAR, China.
Shuk-Han ChengDepartment of Biomedical Science, City University of Hong Kong, 999077, Kowloon, Hong Kong SAR, China.ORCID http://orcid.org/0000-0002-5822-7238
Wen-Ning ZhaoChemical Neurobiology Laboratory, Center for Genomic Medicine, Massachusetts General Hospital, Department of Neurology, Harvard Medical School, Boston, MA, 02114, USA.
Annapurna PoduriEpilepsy Genetics Program and F.M. Kirby Neurobiology Center, Boston Children's Hospital, Department of Neurology, Harvard Medical School, Boston, MA, 02115, USA.
Xin WangDepartment of Biomedical Science, City University of Hong Kong, 999077, Kowloon, Hong Kong SAR, China. xin.wang@cityu.edu.hk.ORCID http://orcid.org/0000-0002-5122-2418
Stephen J HaggartyChemical Neurobiology Laboratory, Center for Genomic Medicine, Massachusetts General Hospital, Department of Neurology, Harvard Medical School, Boston, MA, 02114, USA. shaggarty@mgh.harvard.edu.ORCID http://orcid.org/0000-0002-7872-168X
Peng ShiDepartment of Biomedical Engineering, City University of Hong Kong, 999077, Kowloon, Hong Kong SAR, China. pengshi@cityu.edu.hk.ORCID http://orcid.org/0000-0003-0629-4161

Funding

Neuroscience Resident Research ProgramR25NS065743 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI CASH, SYDNEY S, WILLIAMS, ZIV · 2009 to 2023
$11.8M
NINDS NIH HHS R25 NS065743
6 · The paper itself

Abstract

Technologies for mapping the spatial and temporal patterns of neural activity have advanced our understanding of brain function in both health and disease. An important application of these technologies is the discovery of next-generation neurotherapeutics for neurological and psychiatric disorders. Here, we describe an in vivo drug screening strategy that combines high-throughput technology to generate large-scale brain activity maps (BAMs) with machine learning for predictive analysis. This platform enables evaluation of compounds' mechanisms of action and potential therapeutic uses based on information-rich BAMs derived from drug-treated zebrafish larvae. From a screen of clinically used drugs, we found intrinsically coherent drug clusters that are associated with known therapeutic categories. Using BAM-based clusters as a functional classifier, we identify anti-seizure-like drug leads from non-clinical compounds and validate their therapeutic effects in the pentylenetetrazole zebrafish seizure model. Collectively, this study provides a framework to advance the field of systems neuropharmacology.

Indexed as

Machine LearningAnimalsAnimals, Genetically ModifiedBrainBrain MappingConvulsantsDisease Models, AnimalDrug Evaluation, PreclinicalLarvaMolecular StructureNeuropharmacologyPentylenetetrazoleSeizuresZebrafishConvulsantsPentylenetetrazole

Identifiers

PMID30510233
PMCPMC6277389

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.