Evidence map›Paper›PMID 30510221›Full record

ArticleNature structural & molecular biology2018

Chaperonin CCT checkpoint function in basal transcription factor TFIID assembly.

Simona V Antonova, Matthias Haffke, Eleonora Corradini, Mykolas Mikuciunas, Teck Y Low, Luca Signor, Robert M van Es, Kapil Gupta, Elisabeth Scheer, Harmjan R Vos and 4 more

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 6 countries.

Simona V Antonova *Molecular Cancer Research and Regenerative Medicine, University Medical Centre Utrecht, Utrecht, The Netherlands.
Matthias Haffke *European Molecular Biology Laboratory (EMBL), Grenoble, France.ORCID http://orcid.org/0000-0001-8126-9316
Eleonora CorradiniBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences and Netherlands Proteomics Centre, Utrecht University, Utrecht, The Netherlands.
Mykolas MikuciunasMolecular Cancer Research and Regenerative Medicine, University Medical Centre Utrecht, Utrecht, The Netherlands.
Teck Y LowBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences and Netherlands Proteomics Centre, Utrecht University, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0001-7878-7534
Luca SignorUniversité Grenoble Alpes, CEA, CNRS, IBS (Institut de Biologie Structurale), Grenoble, France.ORCID http://orcid.org/0000-0003-3880-2466
Robert M van EsMolecular Cancer Research, Center for Molecular Medicine, University Medical Centre Utrecht, Utrecht, The Netherlands.
Kapil GuptaBristol Synthetic Biology Centre BrisSynBio, Biomedical Sciences, School of Biochemistry, University of Bristol, Bristol, UK.ORCID http://orcid.org/0000-0002-2115-3503
Elisabeth ScheerInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France.
Harmjan R VosMolecular Cancer Research, Center for Molecular Medicine, University Medical Centre Utrecht, Utrecht, The Netherlands.
László ToraInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France.ORCID http://orcid.org/0000-0001-7398-2250
Albert J R HeckBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences and Netherlands Proteomics Centre, Utrecht University, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0002-2405-4404
H T Marc TimmersMolecular Cancer Research and Regenerative Medicine, University Medical Centre Utrecht, Utrecht, The Netherlands. m.timmers@dkfz-heidelberg.de.
Imre BergerBristol Synthetic Biology Centre BrisSynBio, Biomedical Sciences, School of Biochemistry, University of Bristol, Bristol, UK. imre.berger@bristol.ac.uk.ORCID http://orcid.org/0000-0001-7518-9045
Centre National de la Recherche Scientifique · FRUtrecht University · NLUniversity Medical Center Utrecht · NLUniversity of Bristol · GBNovartis (Switzerland) · CHUniversity of Freiburg · DE

Funding

Biotechnology and Biological Sciences Research Council BB/L01386X/1Wellcome Trust
6 · The paper itself

Abstract

TFIID is a cornerstone of eukaryotic gene regulation. Distinct TFIID complexes with unique subunit compositions exist and several TFIID subunits are shared with other complexes, thereby conveying precise cellular control of subunit allocation and functional assembly of this essential transcription factor. However, the molecular mechanisms that underlie the regulation of TFIID remain poorly understood. Here we use quantitative proteomics to examine TFIID submodules and assembly mechanisms in human cells. Structural and mutational analysis of the cytoplasmic TAF5-TAF6-TAF9 submodule identified novel interactions that are crucial for TFIID integrity and for allocation of TAF9 to TFIID or the Spt-Ada-Gcn5 acetyltransferase (SAGA) co-activator complex. We discover a key checkpoint function for the chaperonin CCT, which specifically associates with nascent TAF5 for subsequent handover to TAF6-TAF9 and ultimate holo-TFIID formation. Our findings illustrate at the molecular level how multisubunit complexes are generated within the cell via mechanisms that involve checkpoint decisions facilitated by a chaperone.

Indexed as

Models, MolecularChaperonin Containing TCP-1Crystallography, X-RayHeLa CellsHumansMass SpectrometryProtein DomainsTATA-Binding Protein Associated FactorsTranscription Factor TFIIDTranscription, GeneticChaperonin Containing TCP-1TAF5 protein, humanTAF6 protein, humanTAF9 protein, humanTATA-Binding Protein Associated FactorsTranscription Factor TFIID

Identifiers

PMID30510221
PMCPMC6292499
OpenAlexW2902745704

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.