Evidence map›Paper›PMID 30510137›Full record

ArticleThe Journal of biological chemistry2019

Modeling the bioconversion of polysaccharides in a continuous reactor: A case study of the production of oligogalacturonates by

Jacques-Alexandre Sepulchre, Sylvie Reverchon, Jean-Luc Gouzé, William Nasser

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
1.4field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 5 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jacques-Alexandre SepulchreUniversité Côte d'Azur, Institute of Physics of Nice, UMR7010 CNRS, F-06560 Sophia Antipolis, France. Electronic address: jacques-alexandre.sepulchre@univ-cotedazur.fr.
Sylvie ReverchonUniversité Lyon, Université Claude Bernard Lyon 1, INSA-Lyon, CNRS, UMR5240, Microbiologie, Adaptation, Pathogénie, 10 Rue Raphaël Dubois, F-69622 Villeurbanne, France.
Jean-Luc GouzéUniversité Côte d'Azur, Inria, INRA, CNRS, Sorbonne Université, Biocore team, F-06560 Sophia Antipolis, France.
William NasserUniversité Lyon, Université Claude Bernard Lyon 1, INSA-Lyon, CNRS, UMR5240, Microbiologie, Adaptation, Pathogénie, 10 Rue Raphaël Dubois, F-69622 Villeurbanne, France.
Centre National de la Recherche Scientifique · FRUniversité Claude Bernard Lyon 1 · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the quest for a sustainable economy of the Earth's resources and for renewable sources of energy, a promising avenue is to exploit the vast quantity of polysaccharide molecules contained in green wastes. To that end, the decomposition of pectin appears to be an interesting target because this polymeric carbohydrate is abundant in many fruit pulps and soft vegetables. To quantitatively study this degradation process, here we designed a bioreactor that is continuously fed with de-esterified pectin (PGA). Thanks to the pectate lyases produced by bacteria cultivated in the vessel, the PGA is depolymerized into oligogalacturonates (UGA), which are continuously extracted from the tank. A mathematical model of our system predicted that the conversion efficiency of PGA into UGA increases in a range of coefficients of dilution until reaching an upper limit where the fraction of UGA that is extracted from the bioreactor is maximized. Results from experiments with a continuous reactor hosting a strain of the plant pathogenic bacterium

Indexed as

BioreactorsModels, BiologicalBacterial ProteinsEnterobacteriaceaeOligosaccharidesPectinsPolysaccharide-LyasesPolysaccharidesVirulence FactorsBacterial Proteinsoligogalacturonic acidOligosaccharidespectate lyasePectinsPolysaccharide-LyasesPolysaccharidesVirulence Factorscontinuous reactorDickeya dadantiidimensionless parameterenzyme kineticsgalacturonategalacturonic acidgene regulationmathematical modelingmicrobiologyoligosaccharidepectate lyasespectinpolysaccharideunsaturated oligogalacturonate

Identifiers

PMID30510137
PMCPMC6364777
OpenAlexW2902678533

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.