Evidence map›Paper›PMID 30508697›Full record

ArticleRedox biology2019

Proteomic analysis of microbial induced redox-dependent intestinal signaling.

Jason D Matthews, April R Reedy, Huixia Wu, Benjamin H Hinrichs, Trevor M Darby, Caroline Addis, Brian S Robinson, Young-Mi Go, Dean P Jones, Rheinallt M Jones and 1 more

Open access · goldAbstract read
In one paragraph

Article in Redox biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 25 citations in OpenAlex.

  1. Preventing Colitis-Associated Colon Cancer With Antioxidants: A Systematic Review.Cellular and molecular gastroenterology and hepatology · 2021
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Health-Promoting Role ofMicroorganisms · 2021
    Review
  9. Article
  10. In Vivo Wireless Sensors for Gut Microbiome Redox Monitoring.IEEE transactions on bio-medical engineering · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Jason D MatthewsDepartment of Pathology, Emory University School of Medicine, Atlanta, GA, USA.
April R ReedyDepartment of Pathology, Emory University School of Medicine, Atlanta, GA, USA.
Huixia WuDepartment of Pathology, Emory University School of Medicine, Atlanta, GA, USA.
Benjamin H HinrichsDepartment of Pathology, Emory University School of Medicine, Atlanta, GA, USA.
Trevor M DarbyDepartment of Pediatrics, Emory University School of Medicine, Atlanta, GA, USA.
Caroline AddisDepartment of Pediatrics, Emory University School of Medicine, Atlanta, GA, USA.
Brian S RobinsonDepartment of Pathology, Emory University School of Medicine, Atlanta, GA, USA.
Young-Mi GoDepartment of Medicine, Emory University School of Medicine, Atlanta, GA, USA.
Dean P JonesDepartment of Medicine, Emory University School of Medicine, Atlanta, GA, USA.
Rheinallt M JonesDepartment of Pediatrics, Emory University School of Medicine, Atlanta, GA, USA.
Andrew S NeishDepartment of Pathology, Emory University School of Medicine, Atlanta, GA, USA. Electronic address: aneish@emory.edu.
Emory University · US

Funding

Microbial Influence on Mucosal HomeostasisR01AI064462 · NIAID · EMORY UNIVERSITY · PI NEISH, ANDREW S · 2006 to 2022
$5.5M
Research Training in Translational Gastroenterology and HepatologyT32DK108735 · NIDDK · EMORY UNIVERSITY · PI SUBRA KUGATHASAN · 2016 to 2026
$2.6M
PATHOBIOLOGY OF MUCOSAL/EPITHELIAL DISEASET32DK007771 · NIDDK · EMORY UNIVERSITY · PI NEISH, ANDREW S · 1999 to 2015
$2.0M
Intestinal cell response to bacterial apoptotic signalsR01DK071604 · NIDDK · EMORY UNIVERSITY · PI NEISH, ANDREW S · 2007 to 2011
$1.5M
The molecular mechanisms of intestinal homeostasis.R01DK098391 · NIDDK · EMORY UNIVERSITY · PI JONES, RHEINALLT MELFYN · 2014 to 2017
$1.4M
Control of Epithelial Proliferation by the MicrobiotaR01CA179424 · NCI · EMORY UNIVERSITY · PI JONES, RHEINALLT MELFYN, NEISH, ANDREW S · 2014 to 2017
$1.3M
NCI NIH HHS R01 CA179424NIAID NIH HHS R01 AI064462NIDDK NIH HHS R01 DK071604NIDDK NIH HHS R01 DK098391NIDDK NIH HHS T32 DK007771NIDDK NIH HHS T32 DK108735
6 · The paper itself

Abstract

Intestinal homeostasis is regulated in-part by reactive oxygen species (ROS) that are generated in the colonic mucosa following contact with certain lactobacilli. Mechanistically, ROS can modulate protein function through the oxidation of cysteine residues within proteins. Recent advances in cysteine labeling by the Isotope Coded Affinity Tags (ICATs) technique has facilitated the identification of cysteine thiol modifications in response to stimuli. Here, we used ICATs to map the redox protein network oxidized upon initial contact of the colonic mucosa with Lactobacillus rhamnosus GG (LGG). We detected significant LGG-specific redox changes in over 450 proteins, many of which are implicated to function in cellular processes such as endosomal trafficking, epithelial cell junctions, barrier integrity, and cytoskeleton maintenance and formation. We particularly noted the LGG-specific oxidation of Rac1, which is a pleiotropic regulator of many cellular processes. Together, these data reveal new insights into lactobacilli-induced and redox-dependent networks involved in intestinal homeostasis.

Indexed as

Oxidation-ReductionProteomeProteomicsSignal TransductionCell LineComputational BiologyIntestinal MucosaModels, BiologicalOxidative StressReactive Oxygen SpeciesTandem Mass SpectrometryProteomeReactive Oxygen Species

Identifiers

PMID30508697
PMCPMC6275846
OpenAlexW2901694258

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.