Evidence map›Paper›PMID 30508117›Full record

ArticleNucleic acids research2019

AtTrm5a catalyses 1-methylguanosine and 1-methylinosine formation on tRNAs and is important for vegetative and reproductive growth in Arabidopsis thaliana.

Xiaohuan Jin, Zhengyi Lv, Junbao Gao, Rui Zhang, Ting Zheng, Ping Yin, Dongqin Li, Liangcai Peng, Xintao Cao, Yan Qin and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

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  12. A Natural Variation inThe Plant cell · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Xiaohuan JinCollege of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China.
Zhengyi LvCollege of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China.
Junbao GaoCollege of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China.
Rui ZhangCollege of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China.
Ting ZhengCollege of Life Science, HuaZhong Agricultural University, Wuhan 430070, China.
Ping YinCollege of Life Science, HuaZhong Agricultural University, Wuhan 430070, China.
Dongqin LiNational Key Laboratory of Crop Genetic Improvement, HuaZhong Agricultural University, Wuhan 430070, China.
Liangcai PengCollege of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China.
Xintao CaoInstitute of Biophysics, Chinese Academy of Sciences, China.
Yan QinInstitute of Biophysics, Chinese Academy of Sciences, China.
Staffan PerssonSchool of Biosciences, University of Melbourne, Parkville 3010, VIC, Australia.
Bo ZhengCollege of Horticulture and Forestry Sciences, HuaZhong Agricultural University, Wuhan 430070, China.
Peng ChenCollege of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China.
Huazhong Agricultural University · CNInstitute of Biophysics · CNShanghai Jiao Tong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Modified nucleosides on tRNA are critical for decoding processes and protein translation. tRNAs can be modified through 1-methylguanosine (m1G) on position 37; a function mediated by Trm5 homologs. We show that AtTRM5a (At3g56120) is a Trm5 ortholog in Arabidopsis thaliana. AtTrm5a is localized to the nucleus and its function for m1G and m1I methylation was confirmed by mutant analysis, yeast complementation, m1G nucleoside level on single tRNA, and tRNA in vitro methylation. Arabidopsis attrm5a mutants were dwarfed and had short filaments, which led to reduced seed setting. Proteomics data indicated differences in the abundance of proteins involved in photosynthesis, ribosome biogenesis, oxidative phosphorylation and calcium signalling. Levels of phytohormone auxin and jasmonate were reduced in attrm5a mutant, as well as expression levels of genes involved in flowering, shoot apex cell fate determination, and hormone synthesis and signalling. Taken together, loss-of-function of AtTrm5a impaired m1G and m1I methylation and led to aberrant protein translation, disturbed hormone homeostasis and developmental defects in Arabidopsis plants.

Indexed as

ArabidopsisArabidopsis ProteinsBiocatalysisCalcium SignalingCell NucleusGuanosineIndoleacetic AcidsInosineMutationPhotosynthesisRibosomesRNA, TransfertRNA Methyltransferases1-methylguanosine1-methylinosineArabidopsis ProteinsAT3G56120 protein, ArabidopsisGuanosineIndoleacetic AcidsInosineRNA, TransfertRNA Methyltransferases

Identifiers

PMID30508117
PMCPMC6344853
OpenAlexW2902311102

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.