Evidence map›Paper›PMID 30508039›Full record

ArticleBioinformatics (Oxford, England)2019

GWASpro: a high-performance genome-wide association analysis server.

Bongsong Kim, Xinbin Dai, Wenchao Zhang, Zhaohong Zhuang, Darlene L Sanchez, Thomas Lübberstedt, Yun Kang, Michael K Udvardi, William D Beavis, Shizhong Xu and 1 more

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Fundamental research · 2023
    Review
  8. Genome-Wide Association Studies of Seven Root Traits in Soybean (International journal of molecular sciences · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Molecular approaches for improving oil palm for oil.Molecular breeding : new strategies in plant improvement · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Bongsong KimNoble Research Institute, Ardmore, OK, USA.
Xinbin DaiNoble Research Institute, Ardmore, OK, USA.
Wenchao ZhangNoble Research Institute, Ardmore, OK, USA.
Zhaohong ZhuangNoble Research Institute, Ardmore, OK, USA.
Darlene L SanchezAgriLife Research Center, Texas A&M University, Beaumont, TX, USA.
Thomas LübberstedtDepartment of Agronomy, Iowa State University, Ames, IA, USA.
Yun KangNoble Research Institute, Ardmore, OK, USA.
Michael K UdvardiNoble Research Institute, Ardmore, OK, USA.
William D BeavisDepartment of Agronomy, Iowa State University, Ames, IA, USA.
Shizhong XuDepartment of Botany and Plant Sciences, University of California, Riverside, CA, USA.
Patrick X ZhaoNoble Research Institute, Ardmore, OK, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

summaryWe present GWASpro, a high-performance web server for the analyses of large-scale genome-wide association studies (GWAS). GWASpro was developed to provide data analyses for large-scale molecular genetic data, coupled with complex replicated experimental designs such as found in plant science investigations and to overcome the steep learning curves of existing GWAS software tools. GWASpro supports building complex design matrices, by which complex experimental designs that may include replications, treatments, locations and times, can be accounted for in the linear mixed model. GWASpro is optimized to handle GWAS data that may consist of up to 10 million markers and 10 000 samples from replicable lines or hybrids. GWASpro provides an interface that significantly reduces the learning curve for new GWAS investigators. AVAILABILITY AND IMPLEMENTATION: GWASpro is freely available at https://bioinfo.noble.org/GWASPRO. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Indexed as

Genome-Wide Association StudySoftwareComputers

Identifiers

PMID30508039
PMCPMC6612817

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.