Evidence map›Paper›PMID 30507939›Full record

ArticlePLoS computational biology2018

A stochastic framework to model axon interactions within growing neuronal populations.

Agustina Razetti, Caroline Medioni, Grégoire Malandain, Florence Besse, Xavier Descombes

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Journal of the Royal Society, Interface · 2022
    Article
  3. Cofilin regulates axon growth and branching ofJournal of cell science · 2020
    Article
  4. BCNNM: A Framework forFrontiers in computational neuroscience · 2020
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Agustina RazettiUniversité Côte d'Azur, INRIA, CNRS, I3S, Nice, France.ORCID 0000-0002-8340-2683
Caroline MedioniUniversité Côte d'Azur, CNRS, Inserm, iBV, Nice, France.ORCID 0000-0001-5129-2785
Grégoire MalandainUniversité Côte d'Azur, INRIA, CNRS, I3S, Nice, France.
Florence BesseUniversité Côte d'Azur, CNRS, Inserm, iBV, Nice, France.ORCID 0000-0003-4672-1068
Xavier DescombesUniversité Côte d'Azur, INRIA, CNRS, I3S, Nice, France.
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The confined and crowded environment of developing brains imposes spatial constraints on neuronal cells that have evolved individual and collective strategies to optimize their growth. These include organizing neurons into populations extending their axons to common target territories. How individual axons interact with each other within such populations to optimize innervation is currently unclear and difficult to analyze experimentally in vivo. Here, we developed a stochastic model of 3D axon growth that takes into account spatial environmental constraints, physical interactions between neighboring axons, and branch formation. This general, predictive and robust model, when fed with parameters estimated on real neurons from the Drosophila brain, enabled the study of the mechanistic principles underlying the growth of axonal populations. First, it provided a novel explanation for the diversity of growth and branching patterns observed in vivo within populations of genetically identical neurons. Second, it uncovered that axon branching could be a strategy optimizing the overall growth of axons competing with others in contexts of high axonal density. The flexibility of this framework will make it possible to investigate the rules underlying axon growth and regeneration in the context of various neuronal populations.

Indexed as

Models, NeurologicalAlgorithmsAnimalsAxonsBrainComputational BiologyComputer SimulationDrosophila melanogasterImaging, Three-DimensionalMushroom BodiesMutationNerve RegenerationNeurogenesisNeuronsPhenotypeStochastic Processes

Identifiers

PMID30507939
PMCPMC6292646
OpenAlexW2902023850

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.