Evidence map›Paper›PMID 30505065›Full record

ArticleEcological modelling2017

Parameter sensitivity and identifiability for a biogeochemical model of hypoxia in the northern Gulf of Mexico.

Marcus W Beck, John C Lehrter, Lisa L Lowe, Brandon M Jarvis

Abstract read
In one paragraph

Article in Ecological modelling, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Marcus W BeckUSEPA National Health and Environmental Effects Research Laboratory, Gulf Ecology Division, 1 Sabine Island Drive, Gulf Breeze, FL 32561.
John C LehrterUniversity of South Alabama, Dauphin Island Sea Lab, Dauphin Island, AL 36528.
Lisa L LoweCSRA, Inc. supporting the USEPA, Research Triangle Park, NC 27709.
Brandon M JarvisUSEPA National Health and Environmental Effects Research Laboratory, Gulf Ecology Division, 1 Sabine Island Drive, Gulf Breeze, FL 32561.

Funding

Intramural EPA EPA999999
6 · The paper itself

Abstract

Local sensitivity analyses and identifiable parameter subsets were used to describe numerical constraints of a hypoxia model for bottom waters of the northern Gulf of Mexico. The sensitivity of state variables differed considerably with parameter changes, although most variables were responsive to changes in parameters that influenced planktonic growth rates and less sensitive to physical or chemical parameters. Variation in sensitivity had a direct correspondence with identifiability, such that only small subsets of the complete parameter set had unique effects on the model output. Selecting parameters by decreasing sensitivity demonstrated that only eight of 51 total parameters had a sufficiently unique effect on model output for accurate calibration. As a result, parameter selection heuristics were used to identify parameters for model calibration that depended on combined effects on output, relative sensitivity of each parameter, and ecological categories for the biogeochemical equations. The calibrated zero-dimensional (0-D) unit of the hypoxia model had improved fit to the observed data if sensitive phytoplankton parameters were included in an identifiable subset. Extension of results to a three-dimensional grid of the Gulf of Mexico showed that sensitive parameters for the 0-D model translated to non-trivial changes in the areal estimates of hypoxia.

Indexed as

Coastal General Ecosystem Model (CGEM)Gulf of Mexico (GOM)HypoxiaIdentifiabilitySensitivity

Identifiers

PMID30505065
PMCPMC6260961

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.