Evidence map›Paper›PMID 30504228›Full record

ArticleThe Journal of biological chemistry2019

Identification of a secondary binding site in human macrophage galactose-type lectin by microarray studies: Implications for the molecular recognition of its ligands.

Filipa Marcelo, Nitin Supekar, Francisco Corzana, Joost C van der Horst, Ilona M Vuist, David Live, Geert-Jan P H Boons, David F Smith, Sandra J van Vliet

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Implications of Mucin-TypeMolecules (Basel, Switzerland) · 2025
    Review
  7. Article
  8. Secondary Sites of the C-type Lectin-Like Fold.Chemistry (Weinheim an der Bergstrasse, Germany) · 2024
    Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Review
  18. Genome-wide CRISPR screens reveal a specific ligand for the glycan-binding immune checkpoint receptor Siglec-7.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  19. Review
  20. International journal of molecular sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 4 countries.

Filipa MarceloDepartamento de Química, Faculdade de Ciências e Tecnologia, UCIBIO, REQUIMTE, 2829-516 Caparica, Portugal.
Nitin SupekarComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602.
Francisco CorzanaDepartamento de Química, Universidad de La Rioja, Centro de Investigación en Síntesis Química, E-26006 Logroño, Spain.
Joost C van der HorstDepartment of Molecular Cell Biology and Immunology, Cancer Center Amsterdam, Amsterdam Infection and Immunity Institute, Amsterdam UMC, Vrije Universiteit Amsterdam, 1081 HZ Amsterdam, The Netherlands.
Ilona M VuistDepartment of Molecular Cell Biology and Immunology, Cancer Center Amsterdam, Amsterdam Infection and Immunity Institute, Amsterdam UMC, Vrije Universiteit Amsterdam, 1081 HZ Amsterdam, The Netherlands.
David LiveComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602.
Geert-Jan P H BoonsComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602.
David F SmithDepartment of Biochemistry, Emory Comprehensive Glycomics Center, Emory University School of Medicine, Atlanta, Georgia 30322.
Sandra J van VlietDepartment of Molecular Cell Biology and Immunology, Cancer Center Amsterdam, Amsterdam Infection and Immunity Institute, Amsterdam UMC, Vrije Universiteit Amsterdam, 1081 HZ Amsterdam, The Netherlands. Electronic address: s.vanvliet@vumc.nl.
University of Georgia · USAmsterdam University Medical Centers · NLAmsterdam Neuroscience · NLEmory University · USRede de Química e Tecnologia · PTUniversidad de La Rioja · ES

Funding

Structural Basis of Immune Recognition of Glycosylated AntigensU54GM062116 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI SASISEKHARAN, RAM · 2001 to 2010
$80.3M
TR&D3. Approaches to Proteoglycan Function at Biochemical and Cellular LevelsP41GM103390 · NIGMS · UNIVERSITY OF GEORGIA · PI MOREMEN, KELLEY W. · 2012 to 2019
$14.5M
NIGMS NIH HHS P41 GM103390NIGMS NIH HHS U54 GM062116
6 · The paper itself

Abstract

The human macrophage galactose-type lectin (MGL) is a C-type lectin characterized by a unique specificity for terminal GalNAc residues present in the tumor-associated Tn antigen (αGalNAc-Ser/Thr) and its sialylated form, the sialyl-Tn antigen. However, human MGL has multiple splice variants, and whether these variants have distinct ligand-binding properties is unknown. Here, using glycan microarrays, we compared the binding properties of the short MGL 6C (MGL

Indexed as

Amino Acid SequenceBinding SitesColonic NeoplasmsEpitopesGlycopeptidesHumansLectins, C-TypeLigandsMicroarray AnalysisProtein BindingProtein ConformationProtein DomainsSequence HomologyTumor Cells, CulturedEpitopesGlycopeptidesLectins, C-TypeLigandsMGL lectin, humanalternative splicingcarbohydrate recognition domaincarbohydrate specificityC-type lectinglycanglycopeptideMGLmicroarraymolecular modelingmutantpeptide arraysplice variantTn antigen

Identifiers

PMID30504228
PMCPMC6349122
OpenAlexW2902320787

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.